- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x F6R: FRUCTOSE -6-PHOSPHATE(Non-covalent)
- 6 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)
BG6.2: 8 residues within 4Å:- Chain A: M.1, R.2
- Chain B: S.151, S.152, R.158, I.159, K.160, T.161
15 PLIP interactions:12 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:S.152, B:T.161, B:T.161, B:T.161
- Water bridges: B:R.158, B:K.160, B:K.160, B:T.161, B:T.161, A:M.1, A:R.2, A:P.233
- Salt bridges: B:R.158, B:K.160, B:K.160
BG6.6: 8 residues within 4Å:- Chain B: M.1, R.2
- Chain C: S.151, S.152, R.158, I.159, K.160, T.161
15 PLIP interactions:3 interactions with chain B, 12 interactions with chain C- Water bridges: B:M.1, B:R.2, B:P.233, C:R.158, C:K.160, C:K.160, C:T.161, C:T.161
- Hydrogen bonds: C:S.152, C:T.161, C:T.161, C:T.161
- Salt bridges: C:R.158, C:K.160, C:K.160
BG6.10: 8 residues within 4Å:- Chain A: S.151, S.152, R.158, I.159, K.160, T.161
- Chain C: M.1, R.2
15 PLIP interactions:3 interactions with chain C, 12 interactions with chain A- Water bridges: C:M.1, C:R.2, C:P.233, A:R.158, A:K.160, A:K.160, A:T.161, A:T.161
- Hydrogen bonds: A:S.152, A:T.161, A:T.161, A:T.161
- Salt bridges: A:R.158, A:K.160, A:K.160
BG6.14: 8 residues within 4Å:- Chain D: M.1, R.2
- Chain F: S.151, S.152, R.158, I.159, K.160, T.161
14 PLIP interactions:3 interactions with chain D, 11 interactions with chain F- Hydrogen bonds: D:M.1, D:M.1, F:S.151, F:S.152, F:T.161, F:T.161, F:T.161, F:T.161
- Water bridges: D:K.234, F:S.152, F:K.160
- Salt bridges: F:R.158, F:K.160, F:K.160
BG6.17: 8 residues within 4Å:- Chain D: S.151, S.152, R.158, I.159, K.160, T.161
- Chain E: M.1, R.2
14 PLIP interactions:3 interactions with chain E, 11 interactions with chain D- Hydrogen bonds: E:M.1, E:M.1, D:S.151, D:S.152, D:T.161, D:T.161, D:T.161, D:T.161
- Water bridges: E:K.234, D:S.152, D:K.160
- Salt bridges: D:R.158, D:K.160, D:K.160
BG6.20: 8 residues within 4Å:- Chain E: S.151, S.152, R.158, I.159, K.160, T.161
- Chain F: M.1, R.2
14 PLIP interactions:11 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:S.151, E:S.152, E:T.161, E:T.161, E:T.161, E:T.161, F:M.1, F:M.1
- Water bridges: E:S.152, E:K.160, F:K.234
- Salt bridges: E:R.158, E:K.160, E:K.160
- 3 x ACY: ACETIC ACID(Non-functional Binders)
ACY.3: 3 residues within 4Å:- Chain A: W.15, H.19, K.22
4 PLIP interactions:4 interactions with chain A- Water bridges: A:R.2, A:R.2, A:H.19
- Salt bridges: A:H.19
ACY.7: 3 residues within 4Å:- Chain B: W.15, H.19, K.22
4 PLIP interactions:4 interactions with chain B- Water bridges: B:R.2, B:R.2, B:H.19
- Salt bridges: B:H.19
ACY.11: 3 residues within 4Å:- Chain C: W.15, H.19, K.22
4 PLIP interactions:4 interactions with chain C- Water bridges: C:R.2, C:R.2, C:H.19
- Salt bridges: C:H.19
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: R.86, Y.90, E.101, I.104, N.105, L.106
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.86, A:Y.90, A:Y.90, A:L.106, A:L.106
- Water bridges: A:R.86, A:R.120
GOL.8: 6 residues within 4Å:- Chain B: R.86, Y.90, E.101, I.104, N.105, L.106
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:R.86, B:Y.90, B:Y.90, B:L.106, B:L.106
- Water bridges: B:R.86, B:R.120
GOL.12: 6 residues within 4Å:- Chain C: R.86, Y.90, E.101, I.104, N.105, L.106
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:R.86, C:Y.90, C:Y.90, C:L.106, C:L.106
- Water bridges: C:R.86, C:R.120
GOL.15: 6 residues within 4Å:- Chain D: R.86, Y.90, E.101, I.104, N.105, L.106
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:R.86, D:R.86, D:Y.90, D:L.106, D:L.106
- Water bridges: D:R.120
GOL.18: 6 residues within 4Å:- Chain E: R.86, Y.90, E.101, I.104, N.105, L.106
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:R.86, E:R.86, E:Y.90, E:L.106, E:L.106
- Water bridges: E:R.120
GOL.21: 6 residues within 4Å:- Chain F: R.86, Y.90, E.101, I.104, N.105, L.106
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:R.86, F:R.86, F:Y.90, F:L.106, F:L.106
- Water bridges: F:R.120
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chang, C. et al., Crystal structure of tertiary complex of glucosamine-6-phosphate deaminase from Vibrio cholerae with BETA-D-GLUCOSE-6-PHOSPHATE and FRUCTOSE -6-PHOSPHATE. To Be Published
- Release Date
- 2016-02-03
- Peptides
- Glucosamine-6-phosphate deaminase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
DE
DF
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x F6R: FRUCTOSE -6-PHOSPHATE(Non-covalent)
- 6 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)
- 3 x ACY: ACETIC ACID(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chang, C. et al., Crystal structure of tertiary complex of glucosamine-6-phosphate deaminase from Vibrio cholerae with BETA-D-GLUCOSE-6-PHOSPHATE and FRUCTOSE -6-PHOSPHATE. To Be Published
- Release Date
- 2016-02-03
- Peptides
- Glucosamine-6-phosphate deaminase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
DE
DF
D