SMTL ID : 5hjc.1

BRD3 second bromodomain in complex with histone H3 acetylation at K18

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x ALA- PRO- ARG- ALY- GLN- LEU- ALA- THR- LYS: peptide of Histone H3.1(Non-covalent)

ALA-PRO-ARG-ALY-GLN-LEU-ALA-THR-LYS.1: 15 residues within 4Å: Chain A: W.26, P.27, F.28, V.32, L.37, L.39, D.41, C.81, Y.84, N.85, P.86, D.88, H.89, V.91, M.94 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.28, A:V.32, A:L.39, A:V.91 Hydrogen bonds: A:N.85, A:H.89 Water bridges: A:P.27, A:N.85, A:H.89 Salt bridges: A:D.88

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: S.3, H.5, D.66, A.67, Q.68 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.3, A:S.3, A:H.5, A:A.67, A:Q.68, A:Q.68

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: S.18, K.19 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y.Y. et al., Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain. Mol.Cell (2016)

Release Date

2016-04-20

Peptides

Bromodomain-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 3

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