SMTL ID : 5hkh.1

Crystal structure of Ufm1 in complex with UBA5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

1 x ASP- ASN- GLU- TRP- GLY- ILE- GLU- LEU- VAL: ASP-ASN-GLU-TRP-GLY-ILE-GLU-LEU-VAL(Non-covalent)

ASP-ASN-GLU-TRP-GLY-ILE-GLU-LEU-VAL.1: 17 residues within 4Å: Chain A: K.6, K.22, V.23, L.24, S.25, V.26, P.27, T.30, P.31, A.34, V.35, F.38 Chain B: R.18, L.19, P.20, Y.21, K.22 20 PLIP interactions: 14 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:K.22, A:V.23, A:V.26, A:T.30, A:P.31, A:A.34, A:F.38, A:F.38, A:F.38, B:P.20 Hydrogen bonds: A:V.23, A:S.25, A:S.25, A:T.30, B:K.22 Salt bridges: A:K.6, B:R.18, B:R.18 Water bridges: B:K.22 pi-Stacking: B:Y.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Habisov, S. et al., Structural and Functional Analysis of a Novel Interaction Motif within UFM1-activating Enzyme 5 (UBA5) Required for Binding to Ubiquitin-like Proteins and Ufmylation. J.Biol.Chem. (2016)

Release Date

2016-03-09

Peptides

Ubiquitin-fold modifier 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Ubiquitin-fold modifier 1