SMTL ID : 5hm3.1

2.25 Angstrom Resolution Crystal Structure of Long-chain-fatty-acid-AMP Ligase FadD32 from Mycobacterium tuberculosis in complex with Inhibitor 5'-O-[(11-phenoxyundecanoyl)sulfamoyl]adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x 649: 5'-O-[(11-phenoxyundecanoyl)sulfamoyl]adenosine(Non-covalent)

649.1: 25 residues within 4Å: Chain A: V.238, L.242, G.250, H.258, D.259, M.260, T.264, L.267, A.268, L.271, F.305, A.307, L.338, S.341, E.342, P.343, S.369, Y.370, G.371, L.372, A.373, L.377, D.496, I.507, K.628 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.242, A:T.264, A:L.267, A:L.267, A:A.268, A:L.271, A:F.305, A:A.307, A:L.338, A:L.377 Hydrogen bonds: A:D.259, A:D.259, A:S.341, A:S.369, A:G.371, A:A.373, A:K.628 Water bridges: A:V.344 Salt bridges: A:H.258, A:K.628 pi-Stacking: A:Y.370

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: T.301, G.302 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: T.192 Ligand excluded by PLIP

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 2 residues within 4Å: Chain A: H.587, K.588 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.587, A:K.588 PO4.5: 2 residues within 4Å: Chain A: R.285, R.286 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.285, A:R.286 PO4.6: 4 residues within 4Å: Chain A: S.215, R.510, K.512, R.632 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.215 Water bridges: A:R.632 Salt bridges: A:R.510, A:K.512

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 8 residues within 4Å: Chain A: H.143, R.146, S.215, H.258, T.624, S.625, S.626, K.628 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.143, A:T.624, A:S.625, A:S.626, A:S.626

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: E.314, R.539, V.540, Y.542 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.539 GOL.9: 1 residues within 4Å: Chain A: S.656 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.656

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhn, M.L. et al., Structure of the Essential Mtb FadD32 Enzyme: A Promising Drug Target for Treating Tuberculosis. Acs Infect Dis. (2016)

Release Date

2016-08-03

Peptides

Long-chain-fatty-acid--AMP ligase FadD32: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Long-chain-fatty-acid--AMP ligase FadD32