SMTL ID : 5hmi.3 (2 other biounits)

HDM2 in complex with a 3,3-Disubstituted Piperidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-dimer

Ligands

2 x 62T: {4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}-3-{[5-(trifluoromethyl)thiophen-3-yl]oxy}piperidin-3-yl]methanone(Non-covalent)

62T.1: 19 residues within 4Å: Chain A: Q.9, L.39, L.42, G.43, I.46, M.47, Y.52, Q.57, V.60, F.76, V.78, H.81, I.84, Y.85 Chain B: K.36, E.37, L.39, Y.40 Ligands: 62T.3 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.39, A:L.39, A:Y.52, A:Q.57, A:V.78, A:H.81, A:I.84, A:Y.85, B:L.39, B:Y.40 pi-Stacking: A:Y.52, A:H.81 62T.3: 17 residues within 4Å: Chain A: K.36, L.39, Y.40 Chain B: L.39, L.42, G.43, I.46, M.47, Y.52, Q.57, V.60, F.76, V.78, H.81, I.84, Y.85 Ligands: 62T.1 14 PLIP interactions: 10 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.39, B:L.39, B:I.46, B:V.78, B:H.81, B:I.84, B:Y.85, A:K.36, A:L.39 Water bridges: B:Q.57, A:H.81 pi-Stacking: B:Y.52, B:H.81 pi-Cation interactions: A:K.36

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bogen, S.L. et al., Discovery of Novel 3,3-Disubstituted Piperidines as Orally Bioavailable, Potent, and Efficacious HDM2-p53 Inhibitors. Acs Med.Chem.Lett. (2016)

Release Date

2016-04-06

Peptides

E3 ubiquitin-protein ligase Mdm2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase Mdm2

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