SMTL ID : 5hml.1 (1 other biounit)

Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.136, D.185 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.136, A:D.185, H2O.1, H2O.4, H2O.5, H2O.6

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.188, E.191 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: G.194, R.197 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: R.74 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: L.11, R.14, N.19, F.24, S.27, Y.28, T.31 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.14, A:N.19, A:N.19, A:T.31 EDO.6: 5 residues within 4Å: Chain A: G.192, R.197, K.222, Y.223, N.226 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.191, A:E.191, A:R.197, A:Y.223, A:N.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

AlMalki, F.A. et al., Direct observation of DNA threading in flap endonuclease complexes. Nat.Struct.Mol.Biol. (2016)

Release Date

2016-06-01

Peptides

Exodeoxyribonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Exodeoxyribonuclease

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