SMTL ID : 5hmm.2 (1 other biounit)

Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.111, D.134 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.111, H2O.1, H2O.2, H2O.2, H2O.3, H2O.11 MG.2: 1 residues within 4Å: Chain A: D.182 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.182, H2O.2, H2O.2, H2O.5, H2O.11 MG.3: 1 residues within 4Å: Chain A: D.68 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.68, H2O.1, H2O.1, H2O.2, H2O.8, H2O.8

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: G.194, A.195, K.196, R.197 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: P.23, A.25, S.26 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: V.54, R.106 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: K.37 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

AlMalki, F.A. et al., Direct observation of DNA threading in flap endonuclease complexes. Nat.Struct.Mol.Biol. (2016)

Release Date

2016-06-01

Peptides

Exodeoxyribonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Exodeoxyribonuclease

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