SMTL ID : 5hmp.2 (1 other biounit)

Myosin Vc pre-powerstroke state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.164, S.212 Ligands: VO4.2, ADP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.164, A:S.212, H2O.1, H2O.2

1 x VO4: VANADATE ION(Non-covalent)

VO4.2: 11 residues within 4Å: Chain A: S.159, G.160, K.163, N.208, S.211, S.212, R.213, Y.433, G.434 Ligands: MG.1, ADP.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.159, A:G.160, A:K.163, A:N.208, A:S.211, A:S.211, A:S.212, A:G.434 Water bridges: A:S.159, A:N.202, A:R.213, A:R.213

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 22 residues within 4Å: Chain A: I.93, Y.94, N.105, P.106, Y.107, K.108, Q.109, L.110, Y.113, E.158, S.159, G.160, A.161, G.162, K.163, T.164, V.165, Y.169, N.208, N.210 Ligands: MG.1, VO4.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.105, A:Y.113, A:Y.113, A:G.160, A:A.161, A:G.162, A:K.163, A:T.164, A:V.165, A:N.208 Water bridges: A:Q.109, A:Q.109, A:N.210, A:S.212, A:S.212 Salt bridges: A:K.163

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: D.209, N.210, R.251, H.254, I.290, V.293, E.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.254 Water bridges: A:Q.258 EDO.5: 8 residues within 4Å: Chain A: V.244, N.280, Y.281, M.284, G.330, V.391, R.394, D.395 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.280, A:G.330, A:R.394, A:D.395

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ropars, V. et al., The myosin X motor is optimized for movement on actin bundles. Nat Commun (2016)

Release Date

2016-09-07

Peptides

Unconventional myosin-Vc: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Unconventional myosin-Vc

Related Entries With Identical Sequence