SMTL ID : 5hns.1 (1 other biounit)

Structure of glycosylated NPC1 luminal domain C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.141, H.147 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: Q.55, Q.59, N.213, N.215 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain A: L.89, N.95, Q.106, T.153 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 7 residues within 4Å: Chain A: A.44, D.45, P.47, D.168, N.171, N.173, N.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.45

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: Y.188, N.189, D.190 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.190

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.6: 4 residues within 4Å: Chain A: C.85, A.87, S.90, P.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.87 SCN.7: 2 residues within 4Å: Chain A: G.166, Y.167 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structure of glycosylated NPC1 luminal domain C reveals insights into NPC2 and Ebola virus interactions. Febs Lett. (2016)

Release Date

2016-02-10

Peptides

Niemann-Pick C1 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Niemann-Pick C1 protein

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