SMTL ID : 5hot.2 (1 other biounit)

Structural Basis for Inhibitor-Induced Aggregation of HIV-1 Integrase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.40 Å

Oligo State

homo-dimer

Ligands

2 x 2SQ: (2S)-tert-butoxy[4-(8-fluoro-5-methyl-3,4-dihydro-2H-chromen-6-yl)-2-methyl-1-oxo-1,2-dihydroisoquinolin-3-yl]ethanoic acid(Non-covalent)

2SQ.1: 13 residues within 4Å: Chain A: Q.168, A.169, E.170, H.171, T.174, M.178 Chain B: Q.95, A.98, L.102, T.124, T.125, A.129, W.132 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.102, B:W.132 Hydrogen bonds: A:E.170, A:E.170, A:H.171 Salt bridges: A:H.171 2SQ.2: 12 residues within 4Å: Chain A: Q.95, A.98, T.124, T.125, A.128, A.129, W.132 Chain B: A.169, E.170, H.171, T.174, M.178 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:Q.95, A:T.125, A:A.128, A:W.132, B:T.174 Hydrogen bonds: B:E.170, B:H.171, B:H.171 Salt bridges: B:H.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gupta, K. et al., Structural Basis for Inhibitor-Induced Aggregation of HIV Integrase. PLoS Biol. (2016)

Release Date

2016-12-14

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Integrase

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