SMTL ID : 5hs6.1

Human 17beta-hydroxysteroid dehydrogenase type 14 in complex with Estrone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: G.18, R.21, G.22, I.23, D.42, K.43, C.63, D.64, V.65, N.91, A.92, G.93, L.115, I.141, S.142, S.143, Y.156, K.160, P.186, G.187, N.188, I.189, T.191, P.192, L.193, W.194 Ligands: J3Z.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:P.186 Hydrogen bonds: A:G.18, A:G.20, A:R.21, A:I.23, A:K.43, A:D.64, A:D.64, A:V.65, A:N.91, A:Y.156, A:K.160, A:I.189, A:I.189, A:L.193 Water bridges: A:D.42, A:D.42, A:N.91 Salt bridges: A:R.21 NAD.4: 27 residues within 4Å: Chain B: G.18, R.21, G.22, I.23, D.42, K.43, C.63, D.64, V.65, N.91, A.92, G.93, L.115, I.141, S.142, S.143, Y.156, K.160, P.186, G.187, N.188, I.189, T.191, P.192, L.193, W.194 Ligands: J3Z.5 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:P.186 Hydrogen bonds: B:G.18, B:G.20, B:R.21, B:I.23, B:K.43, B:D.64, B:D.64, B:V.65, B:N.91, B:Y.156, B:K.160, B:I.189, B:I.189, B:L.193 Water bridges: B:D.42, B:D.42, B:N.91 Salt bridges: B:R.21 NAD.7: 27 residues within 4Å: Chain C: G.18, R.21, G.22, I.23, D.42, K.43, C.63, D.64, V.65, N.91, A.92, G.93, L.115, I.141, S.142, S.143, Y.156, K.160, P.186, G.187, N.188, I.189, T.191, P.192, L.193, W.194 Ligands: J3Z.8 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:P.186 Hydrogen bonds: C:G.18, C:G.20, C:R.21, C:I.23, C:K.43, C:D.64, C:V.65, C:N.91, C:K.160, C:I.189, C:I.189, C:T.191, C:L.193 Water bridges: C:D.42, C:D.42, C:T.66, C:N.91 Salt bridges: C:R.21 NAD.10: 27 residues within 4Å: Chain D: G.18, R.21, G.22, I.23, D.42, K.43, C.63, D.64, V.65, N.91, A.92, G.93, L.115, I.141, S.142, S.143, Y.156, K.160, P.186, G.187, N.188, I.189, T.191, P.192, L.193, W.194 Ligands: J3Z.11 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:P.186 Hydrogen bonds: D:G.18, D:G.20, D:R.21, D:I.23, D:K.43, D:D.64, D:V.65, D:N.91, D:K.160, D:I.189, D:I.189, D:T.191, D:L.193 Water bridges: D:D.42, D:D.42, D:T.66, D:N.91 Salt bridges: D:R.21

4 x J3Z: (9beta,13alpha)-3-hydroxyestra-1,3,5(10)-trien-17-one(Non-covalent)

J3Z.2: 10 residues within 4Å: Chain A: H.95, Q.150, Y.156, L.193, W.194, L.197, M.201, T.207 Chain D: Y.255 Ligands: NAD.1 7 PLIP interactions: 1 interactions with chain D, 6 interactions with chain A Hydrophobic interactions: D:Y.255, A:H.95, A:Y.156, A:L.193, A:W.194 Hydrogen bonds: A:Y.156 pi-Cation interactions: A:H.95 J3Z.5: 10 residues within 4Å: Chain B: H.95, Q.150, Y.156, L.193, W.194, L.197, M.201, T.207 Chain C: Y.255 Ligands: NAD.4 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:H.95, B:Y.156, B:L.193, B:W.194, C:Y.255 Hydrogen bonds: B:Y.156 pi-Cation interactions: B:H.95 J3Z.8: 10 residues within 4Å: Chain B: Y.255 Chain C: H.95, Q.150, Y.156, L.193, W.194, L.197, M.201, T.207 Ligands: NAD.7 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain C Hydrophobic interactions: B:Y.255, C:H.95, C:Y.156, C:L.193, C:W.194 Hydrogen bonds: C:Y.156 pi-Cation interactions: C:H.95 J3Z.11: 10 residues within 4Å: Chain A: Y.255 Chain D: H.95, Q.150, Y.156, L.193, W.194, L.197, M.201, T.207 Ligands: NAD.10 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:H.95, D:Y.156, D:L.193, D:W.194, A:Y.255 Hydrogen bonds: D:Y.156 pi-Cation interactions: D:H.95

4 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: E.52, L.55, P.56, G.57, A.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.55, A:G.57, A:A.58 NA.6: 5 residues within 4Å: Chain B: E.52, L.55, P.56, G.57, A.58 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.52, B:G.57, B:A.58 NA.9: 5 residues within 4Å: Chain C: E.52, L.55, P.56, G.57, A.58 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.52, C:G.57, C:A.58 NA.12: 5 residues within 4Å: Chain D: E.52, L.55, P.56, G.57, A.58 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.52, D:G.57, D:A.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bertoletti, N. et al., New Insights into Human 17 beta-Hydroxysteroid Dehydrogenase Type 14: First Crystal Structures in Complex with a Steroidal Ligand and with a Potent Nonsteroidal Inhibitor. J.Med.Chem. (2016)

Release Date

2016-07-13

Peptides

17-beta-hydroxysteroid dehydrogenase 14: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

17-beta-hydroxysteroid dehydrogenase 14

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