SMTL ID : 5htl.1

Structure of MshE with cdg

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

homo-dimer

Ligands

2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)

C2E.1: 17 residues within 4Å: Chain A: R.7, R.9, L.10, G.11, D.12, L.25, L.29, Q.32, R.38, L.39, G.40, D.41, L.54, L.58, Q.61, D.108, A.110 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.7, A:L.10, A:G.11, A:D.12, A:Q.32, A:Q.32, A:Q.32, A:L.39, A:G.40, A:D.41, A:Q.61 Water bridges: A:R.9, A:D.108, A:A.110 Salt bridges: A:R.7, A:R.38, A:D.108 C2E.2: 20 residues within 4Å: Chain A: S.63, L.64, P.65 Chain B: R.7, R.9, L.10, G.11, D.12, L.25, L.29, Q.32, R.38, L.39, G.40, D.41, L.54, L.58, Q.61, S.107, A.110 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:R.7, B:L.10, B:G.11, B:D.12, B:Q.32, B:L.39, B:G.40, B:D.41, B:Q.61, B:S.107 Water bridges: B:R.37, B:D.108, B:A.110 Salt bridges: B:R.7, B:D.12, B:D.108 pi-Cation interactions: B:R.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y.C. et al., Nucleotide binding by the widespread high-affinity cyclic di-GMP receptor MshEN domain. Nat Commun (2016)

Release Date

2016-10-05

Peptides

MSHA biogenesis protein MshE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MSHA biogenesis protein MshE