SMTL ID : 5hu8.1

The crystal structure of hemagglutinin from A/Sichuan/26221/2014 (H5N6) influenza virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 2 residues within 4Å: Chain A: Q.20, N.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.28 NAG-FUC.3: 2 residues within 4Å: Chain B: Q.20, N.28 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.28 NAG-FUC.5: 2 residues within 4Å: Chain C: Q.20, N.28 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.28

3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 5 residues within 4Å: Chain A: N.170, N.241, D.242, A.243 Chain B: S.222 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.4: 3 residues within 4Å: Chain B: N.170, N.241, A.243 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.6: 3 residues within 4Å: Chain C: N.170, N.241, A.243 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain A: N.291 No protein-ligand interaction detected (PLIP) NAG.8: 1 residues within 4Å: Chain B: N.291 No protein-ligand interaction detected (PLIP) NAG.9: 1 residues within 4Å: Chain C: N.291 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Molecular Characterizations of Surface Proteins Hemagglutinin and Neuraminidase from Recent H5Nx Avian Influenza Viruses. J.Virol. (2016)

Release Date

2016-04-13

Peptides

hemagglutinin HA1: ABC
hemagglutinin HA2: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
B

E
D

F
F

hemagglutinin HA1

hemagglutinin HA2