SMTL ID : 5hv1.1

Rifampin phosphotransferase in complex with AMPPNP and rifampin from Listeria monocytogenes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 21 residues within 4Å: Chain A: K.38, A.131, R.133, F.146, A.147, G.148, T.152, L.154, Q.199, Q.200, M.201, I.202, L.231, G.232, E.233, V.236, E.313, V.324, Q.325, R.327 Ligands: MG.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.38, A:G.148, A:Q.200, A:I.202, A:E.313, A:R.327, A:R.327 Salt bridges: A:K.38, A:R.133

1 x RFP: RIFAMPICIN(Non-covalent)

RFP.2: 17 residues within 4Å: Chain A: I.347, V.349, Q.352, Y.367, T.370, T.371, P.372, A.373, V.384, I.386, L.403, S.406, L.494, F.495, I.503, M.504, M.507 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.347, A:V.384, A:V.384, A:I.386, A:L.494, A:F.495 Hydrogen bonds: A:Q.352, A:Y.367, A:T.371 Water bridges: A:R.682

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: E.313, Q.325, R.327 Ligands: ANP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qi, X. et al., Structural basis of rifampin inactivation by rifampin phosphotransferase. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-03-30

Peptides

Phosphoenolpyruvate synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoenolpyruvate synthase