SMTL ID : 5hvn.1

3.0 Angstrom Crystal Structure of 3-dehydroquinate Synthase (AroB) from Francisella tularensis in Complex with NAD.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 25 residues within 4Å: Chain A: N.45, T.47, V.48, L.51, Y.52, D.73, E.75, K.78, G.107, G.108, V.109, D.112, T.132, T.133, L.135, D.139, S.140, K.145, N.155, F.172, T.175, L.176, P.177, E.180, K.228 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.135, A:D.139 Hydrogen bonds: A:N.45, A:T.47, A:Y.52, A:Y.52, A:D.73, A:E.75, A:K.78, A:G.108, A:V.109, A:D.112, A:T.132, A:T.133, A:T.133, A:N.155, A:N.155, A:T.175, A:K.228 Water bridges: A:G.107, A:I.110 NAD.3: 25 residues within 4Å: Chain B: N.45, T.47, V.48, L.51, Y.52, D.73, E.75, K.78, G.107, G.108, V.109, D.112, T.132, T.133, L.135, D.139, S.140, K.145, N.155, F.172, T.175, L.176, P.177, E.180, K.228 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.135, B:D.139 Hydrogen bonds: B:N.45, B:Y.52, B:D.73, B:E.75, B:K.78, B:G.108, B:V.109, B:D.112, B:T.133, B:N.155, B:N.155, B:K.228 Water bridges: B:G.107, B:I.110

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: N.247, G.249, T.251, I.336 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: N.247, G.249, T.251, I.336 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 3.0 Angstrom Crystal Structure of 3-dehydroquinate Synthase (AroB) from Francisella tularensis in Complex with NAD. To Be Published

Release Date

2016-02-10

Peptides

3-dehydroquinate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3-dehydroquinate synthase