- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.47 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x VDM: (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL(Non-covalent)
VDM.2: 16 residues within 4Å:- Chain A: W.105, D.150, Y.151, H.152, H.179, T.180, H.210, I.249, R.287, R.325, D.386, G.387, M.388, N.389, L.390
- Ligands: UDP.1
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:H.179
- Hydrogen bonds: A:D.150, A:H.179, A:R.287, A:R.325, A:D.386, A:G.387, A:M.388, A:N.389, A:L.390
- Water bridges: A:D.386
VDM.4: 18 residues within 4Å:- Chain B: W.105, D.150, Y.151, H.152, H.179, T.180, H.210, I.249, R.287, I.291, K.292, R.325, D.386, G.387, M.388, N.389, L.390
- Ligands: UDP.3
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:H.179
- Hydrogen bonds: B:D.150, B:R.325, B:R.325, B:D.386, B:D.386, B:G.387, B:M.388, B:N.389, B:L.390
VDM.6: 16 residues within 4Å:- Chain C: W.105, D.150, Y.151, H.152, H.179, T.180, H.210, I.249, R.287, R.325, D.386, G.387, M.388, N.389, L.390
- Ligands: UDP.5
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:H.179
- Hydrogen bonds: C:D.150, C:D.150, C:R.287, C:R.325, C:G.387, C:M.388, C:N.389, C:L.390
- Water bridges: C:D.386
VDM.8: 18 residues within 4Å:- Chain D: W.105, D.150, Y.151, H.152, H.179, T.180, H.210, I.249, R.287, I.291, K.292, R.325, D.386, G.387, M.388, N.389, L.390
- Ligands: UDP.7
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:H.179
- Hydrogen bonds: D:D.150, D:D.150, D:H.179, D:R.325, D:R.325, D:D.386, D:G.387, D:M.388, D:N.389, D:L.390
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miao, Y. et al., Structural and In Vivo Studies on Trehalose-6-Phosphate Synthase from Pathogenic Fungi Provide Insights into Its Catalytic Mechanism, Biological Necessity, and Potential for Novel Antifungal Drug Design. MBio (2017)
- Release Date
- 2017-05-03
- Peptides
- Alpha,alpha-trehalose-phosphate synthase (UDP-forming): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.47 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x VDM: (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miao, Y. et al., Structural and In Vivo Studies on Trehalose-6-Phosphate Synthase from Pathogenic Fungi Provide Insights into Its Catalytic Mechanism, Biological Necessity, and Potential for Novel Antifungal Drug Design. MBio (2017)
- Release Date
- 2017-05-03
- Peptides
- Alpha,alpha-trehalose-phosphate synthase (UDP-forming): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D