SMTL ID : 5hvw.2 (1 other biounit)

Monomeric IgG4 Fc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.1: 15 residues within 4Å: Chain A: F.7, F.9, P.10, P.11, K.12, E.24, T.26, V.30, D.31, Q.61, F.62, N.63, T.65, R.67, K.100 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.62 Hydrogen bonds: A:Q.61, A:F.9, A:K.12, A:E.24, A:E.24, A:T.26, A:T.26

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: H.51 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.51, H2O.3 ZN.3: 2 residues within 4Å: Chain A: H.199, H.201 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.199, A:H.201, H2O.3

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: I.143, A.144, V.145, T.159, T.160, P.162, L.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.145, A:V.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shan, L. et al., Generation and Characterization of an IgG4 Monomeric Fc Platform. Plos One (2016)

Release Date

2016-08-17

Peptides

Ig gamma-4 chain C region: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ig gamma-4 chain C region

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