SMTL ID : 5hw3.1

Crystal structure of a beta lactamase from Burkholderia vietnamiensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.48, S.109, R.211, P.212, G.213, T.214 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.48, A:S.109, A:R.211, A:P.212, A:T.214, A:T.214 Water bridges: A:S.48, A:K.51 SO4.2: 2 residues within 4Å: Chain A: G.179, R.183 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.183 Salt bridges: A:R.183 SO4.3: 4 residues within 4Å: Chain A: R.150, Y.151, D.217, R.218 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.151 Salt bridges: A:R.218 SO4.4: 4 residues within 4Å: Chain A: H.1, H.2, H.3, H.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.3, A:H.4 Water bridges: A:H.3, A:H.3 Salt bridges: A:H.1, A:H.4 SO4.5: 4 residues within 4Å: Chain A: R.68, D.70, R.71, L.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.70, A:L.72 Salt bridges: A:R.68 SO4.6: 4 residues within 4Å: Chain A: R.71, V.73, R.119, S.120 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.119 Salt bridges: A:R.71, A:R.119 SO4.7: 4 residues within 4Å: Chain A: E.99, R.103, R.183, R.186 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.103, A:R.183, A:R.186 SO4.8: 3 residues within 4Å: Chain A: H.1, A.6, A.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.7 Salt bridges: A:H.1

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 4 residues within 4Å: Chain A: S.97, E.99, A.100, R.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.97 Salt bridges: A:R.103 ACT.10: 5 residues within 4Å: Chain A: F.82, P.146, N.149, S.215, V.216 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.82, A:V.216 Hydrogen bonds: A:N.149, A:V.216 Water bridges: A:R.150, A:D.217 ACT.11: 1 residues within 4Å: Chain A: R.39 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Potts, K.T. et al., Crystal structure of a beta lactamase from Burkholderia vietnamiensis. to be published

Release Date

2016-02-10

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase