SMTL ID : 5hwe.1

high resolution structure of barbiturase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: E.321, A.370, Q.373, G.374, P.375, G.378 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.321, A:A.370, A:Q.373, A:P.375, A:G.378 MG.4: 6 residues within 4Å: Chain B: E.321, A.370, Q.373, G.374, P.375, G.378 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.321, B:A.370, B:Q.373, B:P.375, B:G.378 MG.7: 6 residues within 4Å: Chain C: E.321, A.370, Q.373, G.374, P.375, G.378 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.321, C:A.370, C:Q.373, C:P.375, C:G.378 MG.10: 6 residues within 4Å: Chain D: E.321, A.370, Q.373, G.374, P.375, G.378 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.321, D:A.370, D:Q.373, D:P.375, D:G.378

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: P.131, R.274 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.267, A:R.267, A:R.274 Salt bridges: A:R.274 SO4.5: 2 residues within 4Å: Chain B: P.131, R.274 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.267, B:R.267, B:R.274 Salt bridges: B:R.274 SO4.8: 2 residues within 4Å: Chain C: P.131, R.274 4 PLIP interactions: 4 interactions with chain C Water bridges: C:R.267, C:R.267, C:R.274 Salt bridges: C:R.274 SO4.11: 2 residues within 4Å: Chain D: P.131, R.274 4 PLIP interactions: 4 interactions with chain D Water bridges: D:R.267, D:R.267, D:R.274 Salt bridges: D:R.274

4 x MHA: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID(Non-covalent)

MHA.3: 14 residues within 4Å: Chain A: G.66, G.67, D.70, R.73, W.102, S.103, G.104, M.210, N.214, S.250, S.251, K.348, S.367, V.368 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.70, A:G.104, A:N.214, A:S.251, A:S.251, A:V.368 Water bridges: A:R.73, A:R.73 Salt bridges: A:K.61, A:R.73, A:K.319, A:K.348 MHA.6: 14 residues within 4Å: Chain B: G.66, G.67, D.70, R.73, W.102, S.103, G.104, M.210, N.214, S.250, S.251, K.348, S.367, V.368 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:D.70, B:G.104, B:N.214, B:S.251, B:S.251, B:V.368 Water bridges: B:R.73, B:R.73 Salt bridges: B:K.61, B:R.73, B:K.319, B:K.348 MHA.9: 14 residues within 4Å: Chain C: G.66, G.67, D.70, R.73, W.102, S.103, G.104, M.210, N.214, S.250, S.251, K.348, S.367, V.368 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.104, C:N.214, C:S.251, C:S.251, C:V.368 Water bridges: C:R.73, C:R.73 Salt bridges: C:K.61, C:R.73, C:K.319, C:K.348 MHA.12: 14 residues within 4Å: Chain D: G.66, G.67, D.70, R.73, W.102, S.103, G.104, M.210, N.214, S.250, S.251, K.348, S.367, V.368 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:G.104, D:N.214, D:S.251, D:S.251, D:V.368 Water bridges: D:R.73, D:R.73 Salt bridges: D:K.61, D:R.73, D:K.319, D:K.348

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peat, T.S. et al., High-Resolution X-Ray Structures of Two Functionally Distinct Members of the Cyclic Amide Hydrolase Family of Toblerone Fold Enzymes. Appl. Environ. Microbiol. (2017)

Release Date

2017-02-01

Peptides

Barbiturase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Barbiturase

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