- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
NA.3: 5 residues within 4Å:- Chain A: A.47, T.50, S.51, E.213, S.236
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.213
NA.4: 5 residues within 4Å:- Chain A: E.54, S.77, A.206, T.209, S.210
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.209, A:T.209
NA.5: 6 residues within 4Å:- Chain A: T.50, S.51, E.54, T.209, S.210, E.213
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.213
- 2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.6: 7 residues within 4Å:- Chain A: Y.17, S.20, D.21, M.215, L.218, A.219, K.222
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.222
1PE.7: 5 residues within 4Å:- Chain A: T.203, L.204, A.206, F.207, Y.292
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.204, A:F.207
- Hydrogen bonds: A:T.203, A:F.207, A:Y.292
- 7 x MYC: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE(Non-covalent)
MYC.8: 4 residues within 4Å:- Chain A: I.113, V.117, I.120, N.258
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:I.113, A:V.117, A:I.120, A:N.258
MYC.9: 1 residues within 4Å:- Chain A: L.109
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.109
MYC.10: 4 residues within 4Å:- Chain A: V.107, F.111, L.134
- Ligands: OLC.18
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.107, A:L.134
MYC.13: 5 residues within 4Å:- Chain A: T.44, V.45, I.48, V.143
- Ligands: MYC.14
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.45, A:I.48, A:I.48, A:V.143
MYC.14: 2 residues within 4Å:- Chain A: R.140
- Ligands: MYC.13
No protein-ligand interaction detected (PLIP)MYC.16: 2 residues within 4Å:- Chain A: L.165, L.168
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.165, A:L.168
MYC.17: 2 residues within 4Å:- Chain A: Y.60, F.202
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.60, A:Y.60, A:F.202
- 3 x MYS: PENTADECANE(Non-covalent)
MYS.11: 4 residues within 4Å:- Chain A: V.263, I.266, L.291, S.298
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.263, A:I.266
MYS.12: 6 residues within 4Å:- Chain A: F.274, S.278, W.283, Q.284, I.286, L.287
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.274, A:W.283, A:L.287
MYS.15: 6 residues within 4Å:- Chain A: I.91, R.282, I.286, L.289, A.290, I.293
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.91, A:I.91, A:I.286, A:L.289, A:A.290
- 3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLC.18: 9 residues within 4Å:- Chain A: L.110, F.114, V.117, I.118, D.121, D.127
- Ligands: CA.1, MYC.10, OLC.20
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.114, A:F.114, A:V.117, A:I.118
- Hydrogen bonds: A:D.121, A:D.127
OLC.19: 5 residues within 4Å:- Chain A: P.53, L.56, L.176, A.179, E.180
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.180
OLC.20: 6 residues within 4Å:- Chain A: F.114, I.118, I.126, D.127, V.130
- Ligands: OLC.18
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.127
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liao, J. et al., Mechanism of extracellular ion exchange and binding-site occlusion in a sodium/calcium exchanger. Nat.Struct.Mol.Biol. (2016)
- Release Date
- 2016-05-11
- Peptides
- sodium,calcium exchanger: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
- 2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 7 x MYC: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE(Non-covalent)
- 3 x MYS: PENTADECANE(Non-covalent)
- 3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liao, J. et al., Mechanism of extracellular ion exchange and binding-site occlusion in a sodium/calcium exchanger. Nat.Struct.Mol.Biol. (2016)
- Release Date
- 2016-05-11
- Peptides
- sodium,calcium exchanger: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.