SMTL ID : 5hxw.1 (5 other biounits)

L-amino acid deaminase from Proteus vulgaris

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 37 residues within 4Å: Chain A: V.43, G.44, G.46, I.47, L.48, V.66, E.67, K.68, E.74, Q.75, S.76, R.78, F.79, Y.80, G.81, Q.82, C.208, A.209, A.210, A.238, G.239, G.240, W.242, F.246, Q.261, Q.263, F.352, G.392, A.393, M.394, T.419, G.420, W.421, G.422, M.423, T.424 Ligands: 16A.4 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Q.75, A:Q.261, A:Q.263 Hydrogen bonds: A:L.48, A:K.68, A:E.74, A:E.74, A:Q.75, A:Q.75, A:S.76, A:S.76, A:Y.80, A:G.81, A:Q.82, A:Q.82, A:A.210, A:A.210, A:G.240, A:T.419, A:G.422, A:M.423, A:T.424, A:T.424 Water bridges: A:G.46, A:G.46, A:E.74, A:E.74 pi-Stacking: A:W.421

3 x 16A: CETYL-TRIMETHYL-AMMONIUM(Non-covalent)

16A.2: 5 residues within 4Å: Chain A: I.335, F.338, M.339, Q.340, S.341 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.335, A:M.339 16A.3: 5 residues within 4Å: Chain A: L.330, N.331, E.332, L.334, I.335 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.334 16A.4: 16 residues within 4Å: Chain A: L.257, A.259, Q.261, I.300, A.302, G.312, Y.315, F.324, V.326, I.328, M.394, I.396, E.400, G.420, W.421 Ligands: FAD.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.257, A:A.259, A:I.300, A:Y.315, A:F.324, A:V.326, A:I.328, A:I.396, A:I.396, A:E.400 pi-Cation interactions: A:W.421

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ju, Y. et al., Crystal structure of a membrane-bound l-amino acid deaminase from Proteus vulgaris. J.Struct.Biol. (2016)

Release Date

2016-08-03

Peptides

L-amino acid deaminase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-amino acid deaminase

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