SMTL ID : 5hxy.1 (5 other biounits)

Crystal structure of XerA recombinase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: R.170, V.171, P.262, H.263, R.266 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.171 Water bridges: A:R.266 Salt bridges: A:R.266 PO4.2: 3 residues within 4Å: Chain A: R.281, Q.285, H.289 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.285 Salt bridges: A:R.281 PO4.3: 6 residues within 4Å: Chain A: R.170, R.266, H.289, T.294, Y.298 Ligands: PO4.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.266, A:Y.298, A:Y.298, A:Y.298 Water bridges: A:R.170, A:R.170 Salt bridges: A:R.170, A:H.289 PO4.4: 6 residues within 4Å: Chain A: G.288, H.289, A.290, S.291, T.294 Ligands: PO4.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.170, A:G.288, A:A.290, A:S.291, A:T.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jo, C.H. et al., Crystal structure of Thermoplasma acidophilum XerA recombinase shows large C-shape clamp conformation and cis-cleavage mode for nucleophilic tyrosine. FEBS Lett. (2016)

Release Date

2017-02-01

Peptides

Tyrosine recombinase XerA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine recombinase XerA

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