- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- monomer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 4 residues within 4Å:- Chain A: I.14, Y.17, Y.18
- Ligands: OLC.23
No protein-ligand interaction detected (PLIP)ACT.6: 1 residues within 4Å:- Chain A: Y.60
No protein-ligand interaction detected (PLIP)ACT.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)ACT.8: 3 residues within 4Å:- Chain A: K.279, R.282, W.283
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.282, A:R.282, A:W.283, A:Q.284
- Salt bridges: A:K.279
- 5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLC.9: 9 residues within 4Å:- Chain A: L.110, I.113, F.114, V.117, I.118, D.121, D.127
- Ligands: CA.4, OLC.10
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:I.113, A:F.114, A:F.114, A:F.114, A:V.117
- Hydrogen bonds: A:D.127
- Water bridges: A:D.121, A:S.124
OLC.10: 11 residues within 4Å:- Chain A: V.107, L.110, F.111, F.114, I.118, I.126, D.127, V.130, L.134, Y.138
- Ligands: OLC.9
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:V.107, A:F.111, A:F.114, A:F.114, A:V.130, A:Y.138
- Water bridges: A:D.127
OLC.11: 11 residues within 4Å:- Chain A: F.182, K.187, A.190, I.195, S.196, D.197, K.198, G.201, L.204, V.205, F.207
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:F.182, A:K.187, A:L.204, A:V.205, A:F.207, A:F.207
- Hydrogen bonds: A:D.197
OLC.22: 8 residues within 4Å:- Chain A: L.52, P.53, L.56, L.172, L.176, A.179, E.180, G.208
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.52, A:L.56, A:L.172, A:L.176
- Hydrogen bonds: A:E.180, A:G.208
OLC.23: 14 residues within 4Å:- Chain A: Y.17, G.76, C.80, L.84, L.88, T.203, L.204, A.206, F.207, L.218, Y.292, I.296
- Ligands: ACT.5, 1PE.15
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:Y.17, A:L.84, A:L.88, A:L.204, A:F.207, A:F.207, A:L.218
- Hydrogen bonds: A:A.206, A:F.207
- Water bridges: A:T.203, A:V.205
- 9 x MYS: PENTADECANE(Non-covalent)(Non-functional Binders)
MYS.12: 2 residues within 4Å:- Chain A: A.116, N.258
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:A.116, A:N.258
MYS.13: 4 residues within 4Å:- Chain A: T.44, V.45, I.48, V.143
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.45, A:I.48, A:I.48, A:V.143
MYS.14: 5 residues within 4Å:- Chain A: F.274, W.283, Q.284, I.286, A.290
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.274, A:A.290
MYS.16: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MYS.17: 5 residues within 4Å:- Chain A: F.135, I.136, L.139, R.140, V.247
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.135, A:I.136, A:L.139, A:R.140, A:V.247
MYS.18: 4 residues within 4Å:- Chain A: I.91, R.282, I.286, I.293
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.286, A:I.293
MYS.19: 6 residues within 4Å:- Chain A: V.259, L.291, S.298, L.299, R.300
- Ligands: MYS.21
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.259, A:V.259, A:L.291, A:R.300
MYS.20: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MYS.21: 4 residues within 4Å:- Chain A: I.293, A.297, S.298
- Ligands: MYS.19
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.293, A:A.297
- 1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liao, J. et al., Mechanism of extracellular ion exchange and binding-site occlusion in a sodium/calcium exchanger. Nat.Struct.Mol.Biol. (2016)
- Release Date
- 2016-05-11
- Peptides
- sodium,calcium exchanger: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- monomer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 9 x MYS: PENTADECANE(Non-covalent)(Non-functional Binders)
- 1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liao, J. et al., Mechanism of extracellular ion exchange and binding-site occlusion in a sodium/calcium exchanger. Nat.Struct.Mol.Biol. (2016)
- Release Date
- 2016-05-11
- Peptides
- sodium,calcium exchanger: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.