SMTL ID : 5hz2.1

Crystal structure of PhaC1 from Ralstonia eutropha

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: A.309, I.312, N.313, R.320 Chain B: G.164, H.165, V.166 Ligands: GOL.2 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:A.309, A:R.320, B:G.164, B:V.166 GOL.2: 9 residues within 4Å: Chain A: L.54, S.58, P.218, D.220, A.309, I.312 Chain B: E.163, H.165 Ligands: GOL.1 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.58, A:S.58, B:H.165 Water bridges: A:K.317 GOL.10: 8 residues within 4Å: Chain A: G.164, H.165, V.166 Chain B: A.309, I.312, N.313, R.320 Ligands: GOL.11 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:A.309, B:R.320, A:G.164, A:V.166 GOL.11: 9 residues within 4Å: Chain A: E.163, H.165 Chain B: L.54, S.58, P.218, D.220, A.309, I.312 Ligands: GOL.10 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:H.165, B:S.58, B:S.58 Water bridges: B:K.317 GOL.19: 8 residues within 4Å: Chain C: A.309, I.312, N.313, R.320 Chain D: G.164, H.165, V.166 Ligands: GOL.20 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:A.309, C:R.320, D:G.164, D:V.166 GOL.20: 9 residues within 4Å: Chain C: L.54, S.58, P.218, D.220, A.309, I.312 Chain D: E.163, H.165 Ligands: GOL.19 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:S.58, C:S.58, D:H.165 Water bridges: C:D.220, C:K.317 GOL.28: 8 residues within 4Å: Chain C: G.164, H.165, V.166 Chain D: A.309, I.312, N.313, R.320 Ligands: GOL.29 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.164, C:V.166, D:A.309, D:R.320 GOL.29: 9 residues within 4Å: Chain C: E.163, H.165 Chain D: L.54, S.58, P.218, D.220, A.309, I.312 Ligands: GOL.28 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:S.58, D:S.58, C:H.165 Water bridges: D:D.220, D:K.317

28 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: P.180, C.181, W.238, R.241, H.242 Ligands: SO4.9 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: F.17, N.19, R.98 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: T.31, D.32, K.33 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: R.277, W.284, Q.333 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: I.46, C.118, F.195, Y.239, Y.244, I.281 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: P.365, A.366, N.367 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain A: A.177, G.178, R.241, H.242, Q.246 Ligands: SO4.3 Ligand excluded by PLIP SO4.12: 6 residues within 4Å: Chain B: P.180, C.181, W.238, R.241, H.242 Ligands: SO4.18 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: F.17, N.19, R.98 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: T.31, D.32, K.33 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: R.277, W.284, Q.333 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain B: I.46, C.118, F.195, Y.239, Y.244, I.281 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain B: P.365, A.366, N.367 Ligand excluded by PLIP SO4.18: 6 residues within 4Å: Chain B: A.177, G.178, R.241, H.242, Q.246 Ligands: SO4.12 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain C: P.180, C.181, W.238, R.241, H.242 Ligands: SO4.27 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain C: F.17, N.19, R.98 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain C: T.31, D.32, K.33 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain C: R.277, W.284, Q.333 Ligand excluded by PLIP SO4.25: 6 residues within 4Å: Chain C: I.46, C.118, F.195, Y.239, Y.244, I.281 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain C: P.365, A.366, N.367 Ligand excluded by PLIP SO4.27: 6 residues within 4Å: Chain C: A.177, G.178, R.241, H.242, Q.246 Ligands: SO4.21 Ligand excluded by PLIP SO4.30: 6 residues within 4Å: Chain D: P.180, C.181, W.238, R.241, H.242 Ligands: SO4.36 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain D: F.17, N.19, R.98 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain D: T.31, D.32, K.33 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain D: R.277, W.284, Q.333 Ligand excluded by PLIP SO4.34: 6 residues within 4Å: Chain D: I.46, C.118, F.195, Y.239, Y.244, I.281 Ligand excluded by PLIP SO4.35: 3 residues within 4Å: Chain D: P.365, A.366, N.367 Ligand excluded by PLIP SO4.36: 6 residues within 4Å: Chain D: A.177, G.178, R.241, H.242, Q.246 Ligands: SO4.30 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, J. et al., Crystal structure of Ralstonia eutropha polyhydroxyalkanoate synthase C-terminal domain and reaction mechanisms. Biotechnol J (2017)

Release Date

2016-12-07

Peptides

Poly-beta-hydroxybutyrate polymerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Poly-beta-hydroxybutyrate polymerase