SMTL ID : 5hz7.1

High-resolution crystal structure of the minor DNA-binding pilin ComP from Neisseria meningitidis in fusion with MBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC-GLC.1: 22 residues within 4Å: Chain A: N.13, D.15, K.16, E.45, E.46, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, G.261, M.331, S.338, W.341, Y.342, R.345 Ligands: BGC.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.45, A:E.45, A:E.46, A:R.67, A:R.67, A:E.154, A:R.345 Water bridges: A:D.66, A:D.66

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: H.392 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.392 EDO.3: 8 residues within 4Å: Chain A: W.159, Y.168, A.169, F.170, Y.177, F.259, E.329, P.332 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.169, A:F.170 Water bridges: A:G.167, A:E.329, A:E.329

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.4: 7 residues within 4Å: Chain A: K.43, E.45, E.46, E.154, Y.342, R.345 Ligands: GLC-GLC-GLC.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.43, A:E.45 Water bridges: A:K.43, A:Y.342, A:Y.342

5 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain A: P.82, A.83, F.86, E.282 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.83, A:E.282 NA.6: 5 residues within 4Å: Chain A: E.79, I.80, T.81, K.103, L.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.79, A:L.104 NA.7: 7 residues within 4Å: Chain A: W.233, N.295, P.299, L.300, G.301, L.312, I.318 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.295, A:N.295, A:L.300, A:G.301 NA.8: 3 residues within 4Å: Chain A: K.176, Y.177, I.334 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.177 Water bridges: A:Y.177 NA.9: 3 residues within 4Å: Chain A: A.319, M.322, E.323 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Berry, J.L. et al., A Comparative Structure/Function Analysis of Two Type IV Pilin DNA Receptors Defines a Novel Mode of DNA Binding. Structure (2016)

Release Date

2016-05-18

Peptides

ComP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ComP