SMTL ID : 5hzr.1

Crystal structure of MtSnf2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

4 x KH2: 3-(1-methylpiperidinium-1-yl)propane-1-sulfonate(Non-covalent)

KH2.1: 5 residues within 4Å: Chain A: N.421, D.422, R.426, Y.646, V.655 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.655 Hydrogen bonds: A:D.422, A:D.422 KH2.2: 3 residues within 4Å: Chain A: Y.125, N.126, Q.158 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.125 Hydrogen bonds: A:Q.158 Water bridges: A:R.260 Salt bridges: A:R.260 KH2.3: 4 residues within 4Å: Chain A: R.324, R.325, K.328, R.331 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.325 Salt bridges: A:K.328, A:R.331 KH2.4: 8 residues within 4Å: Chain A: F.42, N.128, L.129, N.130, R.260, F.261, V.284, L.285 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.42, A:L.129 Hydrogen bonds: A:N.130 Water bridges: A:N.128, A:N.128

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 2 residues within 4Å: Chain A: E.238, S.250 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.250

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 7 residues within 4Å: Chain A: M.137, G.138, L.139, G.140, K.141, T.142, K.352 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.138, A:L.139, A:G.140, A:K.141, A:T.142 Water bridges: A:K.141, A:K.141 Salt bridges: A:K.141, A:K.352 SO4.7: 2 residues within 4Å: Chain A: R.489, Q.493 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.493 Salt bridges: A:R.489 SO4.8: 3 residues within 4Å: Chain A: R.31, H.34, W.298 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.31, A:R.31 Salt bridges: A:R.31, A:H.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xia, X. et al., Structure of chromatin remodeler Swi2/Snf2 in the resting state. Nat.Struct.Mol.Biol. (2016)

Release Date

2016-07-20

Peptides

SNF2-family ATP dependent chromatin remodeling factor like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SNF2-family ATP dependent chromatin remodeling factor like protein