SMTL ID : 5hzw.1

Crystal structure of the orphan region of human endoglin/CD105 in complex with BMP9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.45 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.21, K.24, E.53, W.71, A.72, D.74, R.75, E.120, E.162, P.163, Y.164, F.165, W.239, G.269, M.339, W.349 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.71, A:D.74, A:R.75, A:R.75, A:E.162, A:Y.164 GLC-GLC.4: 16 residues within 4Å: Chain C: N.21, K.24, E.53, W.71, A.72, D.74, R.75, E.120, E.162, P.163, Y.164, F.165, W.239, G.269, M.339, W.349 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:W.71, C:D.74, C:R.75, C:R.75, C:E.162, C:Y.164

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 14 residues within 4Å: Chain A: E.13, G.14, K.15, V.17, D.67, P.280, N.281, E.424, F.425, P.426, T.427, N.456, S.457, N.517 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.13 Hydrogen bonds: A:K.15, A:D.67, A:N.281, A:N.281, A:F.425, A:T.427, A:N.456 NAG.3: 6 residues within 4Å: Chain A: N.475, S.477, L.478, L.492, P.493, S.494 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.477, A:P.493 NAG.5: 14 residues within 4Å: Chain C: E.13, G.14, K.15, V.17, D.67, P.280, N.281, E.424, F.425, P.426, T.427, N.456, S.457, N.517 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:E.13 Hydrogen bonds: C:K.15, C:D.67, C:N.281, C:N.281, C:F.425, C:T.427, C:N.456 NAG.6: 6 residues within 4Å: Chain C: N.475, S.477, L.478, L.492, P.493, S.494 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.477, C:P.493

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saito, T. et al., Structural Basis of the Human Endoglin-BMP9 Interaction: Insights into BMP Signaling and HHT1. Cell Rep (2017)

Release Date

2017-06-07

Peptides

Maltose-binding periplasmic protein,Endoglin: AC
Growth/differentiation factor 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Maltose-binding periplasmic protein,Endoglin

Growth/differentiation factor 2

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