SMTL ID : 5hzx.1 (1 other biounit)

Crystal structure of zebrafish MTH1 in complex with TH588

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 2GE: N~4~-cyclopropyl-6-(2,3-dichlorophenyl)pyrimidine-2,4-diamine(Non-covalent)

2GE.1: 14 residues within 4Å: Chain A: T.28, L.29, K.43, F.47, N.53, F.92, F.94, M.101, W.137, D.139, D.140, W.143, F.159 Ligands: SO4.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.94, A:W.137, A:F.159 Hydrogen bonds: A:N.53, A:N.53, A:D.139 Salt bridges: A:D.139, A:D.140 pi-Stacking: A:W.137

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 9 residues within 4Å: Chain A: L.29, K.43, N.53, G.54, G.56, G.57, E.76, M.121 Ligands: 2GE.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.54, A:G.56 Water bridges: A:N.53, A:N.53 Salt bridges: A:K.43 SO4.3: 1 residues within 4Å: Chain A: R.152 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.152 SO4.4: 5 residues within 4Å: Chain A: D.82, T.83, H.85, D.109, N.110 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.82, A:T.83, A:T.83, A:N.110 Water bridges: A:T.83, A:D.109 Salt bridges: A:H.85

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: Q.34, N.110, Y.111 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.34, A:N.110, A:Y.111

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 3 residues within 4Å: Chain A: E.66, Q.67, R.70 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.66 Water bridges: A:Q.67, A:Q.67, A:Q.67, A:Q.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brautigam, L. et al., Hypoxic Signaling and the Cellular Redox Tumor Environment Determine Sensitivity to MTH1 Inhibition. Cancer Res. (2016)

Release Date

2016-02-10

Peptides

Nudix (Nucleoside diphosphate linked moiety X)-type motif 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nudix (Nucleoside diphosphate linked moiety X)-type motif 1

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