- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.49 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 6 residues within 4Å:- Chain A: P.56, E.57, G.94, W.95, D.96, R.97
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.96, A:D.96, A:R.97
- Water bridges: A:E.57, A:R.97
GOL.3: 7 residues within 4Å:- Chain A: W.296, E.317, K.360, F.373, D.376, F.377, R.380
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.317, A:D.376, A:R.380
- Water bridges: A:E.317
GOL.4: 5 residues within 4Å:- Chain A: H.145, G.148, S.149, Q.192, N.195
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.145, A:G.148
- Water bridges: A:D.150, A:Q.192
GOL.5: 7 residues within 4Å:- Chain A: L.311, P.313, C.323, Q.324, K.325, W.326, S.327
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:C.323, A:W.326
GOL.10: 6 residues within 4Å:- Chain B: P.56, E.57, G.94, W.95, D.96, R.97
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.96, B:D.96, B:R.97
- Water bridges: B:E.57, B:R.97
GOL.11: 7 residues within 4Å:- Chain B: W.296, E.317, K.360, F.373, D.376, F.377, R.380
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.317, B:D.376, B:R.380
- Water bridges: B:K.360
GOL.12: 5 residues within 4Å:- Chain B: H.145, G.148, S.149, Q.192, N.195
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:H.145, B:H.145, B:G.148
- Water bridges: B:Q.192
GOL.13: 7 residues within 4Å:- Chain B: L.311, P.313, C.323, Q.324, K.325, W.326, S.327
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:C.323, B:W.326
- 2 x AFQ: 6-amino-4-{2-[(cyclopentylmethyl)amino]ethyl}-2-(methylamino)-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one(Non-covalent)
AFQ.6: 20 residues within 4Å:- Chain A: V.45, L.68, G.69, N.70, D.102, S.103, Y.106, Q.107, D.156, C.158, I.201, Q.203, G.229, G.230, L.231, A.232, V.233, M.260, G.261, D.280
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:V.45, A:L.68, A:Y.106
- Hydrogen bonds: A:S.103, A:Q.203, A:G.230, A:L.231, A:A.232, A:D.280
- Water bridges: A:D.156, A:L.231
- Salt bridges: A:D.102, A:D.156
- pi-Stacking: A:Y.106, A:Y.106
AFQ.14: 20 residues within 4Å:- Chain B: V.45, L.68, G.69, N.70, D.102, S.103, Y.106, Q.107, D.156, C.158, I.201, Q.203, G.229, G.230, L.231, A.232, V.233, M.260, G.261, D.280
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:V.45, B:L.68, B:Y.106
- Hydrogen bonds: B:S.103, B:Y.106, B:Q.203, B:G.230, B:L.231, B:A.232, B:D.280
- Water bridges: B:D.156, B:L.231
- Salt bridges: B:D.102, B:D.156
- pi-Stacking: B:Y.106, B:Y.106
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ehrmann, F.R. et al., Co-crystallization, Isothermal titration calorimetry and nanoESI-MS reveal dimer disturbing inhibitors. To be Published
- Release Date
- 2017-02-15
- Peptides
- Queuine tRNA-ribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.49 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 2 x AFQ: 6-amino-4-{2-[(cyclopentylmethyl)amino]ethyl}-2-(methylamino)-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one(Non-covalent)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ehrmann, F.R. et al., Co-crystallization, Isothermal titration calorimetry and nanoESI-MS reveal dimer disturbing inhibitors. To be Published
- Release Date
- 2017-02-15
- Peptides
- Queuine tRNA-ribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A