SMTL ID : 5i04.1

Crystal structure of the orphan region of human endoglin/CD105

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.16, D.18, K.19, W.66, A.67, D.69, R.70, E.115, E.157, P.158, Y.159, F.160, W.234, M.334, W.344, R.348 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.69, A:R.70, A:R.70, A:Y.159, A:R.348

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 6 residues within 4Å: Chain A: E.7, K.10, E.419, F.420, N.451, S.452 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.10, A:F.420

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 1 residues within 4Å: Chain A: K.33 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.33 PGE.4: 5 residues within 4Å: Chain A: L.445, T.485, W.498, E.501, R.502 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.502 Water bridges: A:H.466 PGE.5: 5 residues within 4Å: Chain A: E.497, A.500, P.504, I.505, C.531 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.505, A:C.531

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saito, T. et al., Structural Basis of the Human Endoglin-BMP9 Interaction: Insights into BMP Signaling and HHT1. Cell Rep (2017)

Release Date

2017-06-07

Peptides

Maltose-binding periplasmic protein,Endoglin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose-binding periplasmic protein,Endoglin