SMTL ID : 5i0c.1

Crystal structure of predicted acyltransferase YjdJ with acyl-CoA N-acyltransferase domain from Escherichia coli str. K-12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

3 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 1 residues within 4Å: Chain A: E.22 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.22, A:E.22 NI.2: 2 residues within 4Å: Chain A: H.77, K.81 No protein-ligand interaction detected (PLIP) NI.3: 1 residues within 4Å: Chain A: E.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.2, H2O.1

1 x CD: CADMIUM ION(Non-covalent)

CD.4: 1 residues within 4Å: Chain A: E.36 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.36, A:E.36, H2O.1, H2O.2

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 4 residues within 4Å: Chain A: V.40, L.44, K.45, G.50 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.44, A:G.50 Water bridges: A:I.49, A:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., Crystal structure of predicted acyltransferase YjdJ with acyl-CoA N-acyltransferase domain from Escherichia coli str. K-12. To Be Published

Release Date

2016-02-24

Peptides

Uncharacterized protein YjdJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein YjdJ