SMTL ID : 5i3t.1

Native Structure of the Linalool Dehydratase-Isomerase from Castellaniella defragrans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-pentamer

Ligands

3 x BU2: 1,3-BUTANEDIOL(Non-covalent)

BU2.1: 9 residues within 4Å: Chain A: Y.91, Y.265, W.269, V.318, L.366, L.367 Chain D: D.64, F.65 Ligands: K.3 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain A Hydrogen bonds: D:D.64, A:Y.265 Hydrophobic interactions: A:Y.91, A:W.269, A:L.367 BU2.7: 5 residues within 4Å: Chain D: Y.91, Y.265, W.269, L.320, L.367 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:Y.91, D:W.269, D:L.367 Hydrogen bonds: D:Y.265, D:Y.265 BU2.11: 6 residues within 4Å: Chain B: V.88, V.318, L.366 Chain E: I.63, D.64, F.65 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain B Hydrophobic interactions: E:F.65, B:V.88, B:L.366

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: D.369 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: Y.360 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain C: Y.360 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain D: Y.360 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain D: R.33, L.34, A.35, Y.40, L.342, E.346 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain E: Y.360 Ligand excluded by PLIP

4 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: Y.91, M.150, C.205 Ligands: BU2.1 No protein-ligand interaction detected (PLIP) K.5: 1 residues within 4Å: Chain B: C.205 No protein-ligand interaction detected (PLIP) K.10: 1 residues within 4Å: Chain D: C.205 No protein-ligand interaction detected (PLIP) K.13: 2 residues within 4Å: Chain A: Y.70 Chain E: C.205 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

LaMattina, J.W. et al., Native Structure of the Linalool Dehydratase-Isomerase from Castellaniella defragrans. To Be Published

Release Date

2016-06-01

Peptides

Linalool dehydratase/isomerase: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Linalool dehydratase/isomerase