SMTL ID : 5i40.1

BRD9 in complex with Cpd1 (6-methyl-1,6-dihydro-7H-pyrrolo[2,3-c]pyridin-7-one)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.04 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: V.61, T.62, K.65 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.65, A:K.65 EDO.2: 6 residues within 4Å: Chain A: G.22, F.23, A.25, F.26, I.32 Ligands: 67N.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.25, A:F.26 Water bridges: A:Y.85 EDO.3: 4 residues within 4Å: Chain A: Q.16, A.25, F.26, G.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.16 Water bridges: A:K.50 EDO.4: 2 residues within 4Å: Chain A: T.29, D.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.30 Water bridges: A:A.31, A:S.37

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain A: F.26, P.27, G.47, T.48, D.51 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.27

1 x 67N: 6-methyl-1,6-dihydro-7H-pyrrolo[2,3-c]pyridin-7-one(Non-covalent)

67N.6: 9 residues within 4Å: Chain A: F.23, F.24, V.28, I.32, A.33, Y.78, N.79, Y.85 Ligands: EDO.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.32, A:A.33 Hydrogen bonds: A:N.79, A:N.79 pi-Stacking: A:Y.85, A:Y.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crawford, T.D. et al., Diving into the Water: Inducible Binding Conformations for BRD4, TAF1(2), BRD9, and CECR2 Bromodomains. J.Med.Chem. (2016)

Release Date

2016-10-12

Peptides

Bromodomain-containing protein 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 9

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