SMTL ID : 5i4h.1

Caught in the Act: The Crystal Structure of cleaved Cathepsin L bound to the active site of Cathepsin L

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.3, R.4, S.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.4, A:S.5 SO4.2: 3 residues within 4Å: Chain A: C.66, T.95, E.96 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.95, A:T.95, A:E.96 Water bridges: A:C.66, A:E.96 SO4.4: 5 residues within 4Å: Chain A: D.56, S.98, C.99, N.102, K.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.99, A:N.102 SO4.5: 4 residues within 4Å: Chain A: N.19 Chain B: G.82, E.83, E.84 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.83, B:E.84, A:N.19 Water bridges: B:G.82

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: Y.13, F.40, R.41, G.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.41, A:G.44 GOL.6: 6 residues within 4Å: Chain B: S.34, Y.38, I.42, Y.43, F.44, E.45 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.44, B:F.44, B:E.45 Water bridges: B:E.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sosnowski, P. et al., Caught in the act: the crystal structure of cleaved cathepsin L bound to the active site of Cathepsin L. Febs Lett. (2016)

Release Date

2016-04-13

Peptides

Cathepsin L1: A
Cathepsin L1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cathepsin L1

Cathepsin L1