SMTL ID : 5i4z.1

Structure of apo OmoMYC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: K.50, F.53, F.54, K.68, A.69, P.70, K.71, I.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.69 GOL.2: 4 residues within 4Å: Chain A: E.62, A.80, Y.81, S.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.62 Water bridges: A:E.62 GOL.5: 3 residues within 4Å: Chain B: A.80, Y.81, S.84 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.84

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: P.70, K.71 Ligands: CL.4 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: P.70, K.71, V.72 Ligands: CL.3 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: P.70, K.71 Ligand excluded by PLIP

2 x K: POTASSIUM ION(Non-covalent)

K.7: 3 residues within 4Å: Chain B: R.57, D.58, N.65 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.58, H2O.4 K.8: 2 residues within 4Å: Chain B: L.113, S.116 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.116, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jung, L.A. et al., OmoMYC blunts promoter invasion by oncogenic MYC to inhibit gene expression characteristic of MYC-dependent tumors. Oncogene (2017)

Release Date

2016-10-26

Peptides

Myc proto-oncogene protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Myc proto-oncogene protein

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