SMTL ID : 5i5r.1 (3 other biounits)

Crystal structure of a bacterial fucosidase with iminocyclitol (2S,3S,4R,5S)-3,4-dihydroxy-2-ethynyl-5-methylpyrrolidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: W.199, R.229, R.238, H.239 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.229, A:R.238, A:H.239 SO4.2: 2 residues within 4Å: Chain A: Y.49, G.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.50

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 8 residues within 4Å: Chain A: A.30, I.32, W.84, M.87, A.88, V.96, Y.135, F.326 No protein-ligand interaction detected (PLIP)

1 x 68F: (2S,3S,4R,5S,2'S,3'S,4'R,5'S)-2,2'-(butane-1,4-diyl)bis(5-methylpyrrolidine-3,4-diol)(Non-covalent)

68F.4: 10 residues within 4Å: Chain A: H.33, E.54, W.55, H.102, Y.145, W.194, D.196, W.199, E.255, W.283 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.194, A:W.199, A:W.199, A:W.199 Hydrogen bonds: A:E.54, A:E.54, A:H.102, A:E.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Behr, J.B. et al., Will be disclosed later. To Be Published

Release Date

2016-03-02

Peptides

Alpha-L-fucosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-L-fucosidase

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