- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 2 x 67Y: 2-hydroxy-N-[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]acetamide
67Y.2: 15 residues within 4Å:- Chain A: F.34, F.79, Y.177, K.206, Y.211, T.244, M.245, G.316, T.317, A.318, C.319
- Chain B: Y.74, L.157, V.159
- Ligands: PLP.1
15 PLIP interactions:2 interactions with chain B, 13 interactions with chain A- Hydrophobic interactions: B:Y.74, B:V.159, A:F.34, A:F.79, A:Y.177, A:Y.211, A:Y.211, A:T.244, A:A.318
- Hydrogen bonds: A:T.244, A:T.244, A:A.318, A:C.319
- Water bridges: A:Y.145
- pi-Cation interactions: A:R.147
67Y.9: 15 residues within 4Å:- Chain A: Y.74, L.157, V.159
- Chain B: F.34, F.79, Y.177, K.206, Y.211, T.244, M.245, G.316, T.317, A.318, C.319
- Ligands: PLP.8
16 PLIP interactions:14 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:F.34, B:F.34, B:F.79, B:F.79, B:Y.177, B:Y.211, B:T.244, B:A.318, A:Y.74, A:V.159
- Hydrogen bonds: B:T.244, B:T.244, B:T.317, B:A.318, B:C.319
- pi-Cation interactions: B:R.147
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: Y.250, F.288, R.310, L.345, R.348
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.250, A:R.310, A:R.348
- Water bridges: A:E.344
EDO.5: 4 residues within 4Å:- Chain A: V.199, Y.233, P.235
- Chain B: W.198
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.233
- Water bridges: A:G.234
EDO.6: 4 residues within 4Å:- Chain A: N.204, L.265, N.266, G.267
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.266
EDO.7: 2 residues within 4Å:- Chain A: E.254, R.302
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.254, A:R.302
EDO.12: 6 residues within 4Å:- Chain B: D.280, M.281, T.284, E.352, H.363, W.365
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.280, B:E.352, B:H.363
- Water bridges: B:D.280, B:T.284
EDO.13: 7 residues within 4Å:- Chain B: Y.250, E.287, F.288, R.310, E.344, L.345, R.348
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Y.250, B:E.287, B:R.310, B:R.348
- Water bridges: B:R.310, B:E.344
EDO.14: 4 residues within 4Å:- Chain B: E.46, L.63, T.64, L.166
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.64
- Water bridges: B:T.64, B:T.64, B:T.64
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Borthwick, J.A. et al., Structurally Diverse Mitochondrial Branched Chain Aminotransferase (BCATm) Leads with Varying Binding Modes Identified by Fragment Screening. J.Med.Chem. (2016)
- Release Date
- 2016-03-23
- Peptides
- Branched-chain-amino-acid aminotransferase, mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 2 x 67Y: 2-hydroxy-N-[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]acetamide
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Borthwick, J.A. et al., Structurally Diverse Mitochondrial Branched Chain Aminotransferase (BCATm) Leads with Varying Binding Modes Identified by Fragment Screening. J.Med.Chem. (2016)
- Release Date
- 2016-03-23
- Peptides
- Branched-chain-amino-acid aminotransferase, mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B