- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 2 x 68C: 5-methyl-4-oxo-N-(1,3,4-thiadiazol-2-yl)-3,4-dihydrothieno[2,3-d]pyrimidine-6-carboxamide(Non-covalent)
68C.2: 12 residues within 4Å:- Chain A: F.34, F.79, K.83, Y.145, V.174, Y.177, K.206, Y.211, A.318
- Chain B: Y.74, V.159
- Ligands: PMP.1
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:F.34, A:F.34, A:Y.145, A:A.318
- Hydrogen bonds: A:K.83, A:Y.145, A:R.147, A:K.206
- Water bridges: A:F.34, A:K.83, A:Y.145, A:G.175, A:G.175, A:A.318
- pi-Stacking: A:F.34
- pi-Cation interactions: A:R.147
68C.17: 11 residues within 4Å:- Chain A: Y.74, V.159
- Chain B: F.34, F.79, K.83, Y.145, Y.177, K.206, Y.211, A.318
- Ligands: PMP.16
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:F.34, B:Y.145, B:A.318
- Hydrogen bonds: B:K.83, B:Y.145, B:K.206
- Water bridges: B:K.83, B:G.175, B:G.175, B:T.244
- pi-Stacking: B:F.34, B:F.34
- pi-Cation interactions: B:R.147
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 3 residues within 4Å:- Chain A: K.83, A.318, Q.320
Ligand excluded by PLIPCL.4: 2 residues within 4Å:- Chain A: N.204, P.271
Ligand excluded by PLIPCL.5: 2 residues within 4Å:- Chain A: R.96, W.98
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain B: K.83, A.318, Q.320
Ligand excluded by PLIPCL.19: 2 residues within 4Å:- Chain B: N.204, P.271
Ligand excluded by PLIPCL.20: 3 residues within 4Å:- Chain B: R.96, W.98
- Ligands: GOL.25
Ligand excluded by PLIP- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 5 residues within 4Å:- Chain A: Y.250, R.310, E.344, L.345, R.348
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Y.250, A:R.310, A:R.310, A:R.348
- Water bridges: A:Y.250, A:Y.250, A:Y.250
EDO.7: 4 residues within 4Å:- Chain A: E.46, L.63, T.64, L.166
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.64
- Water bridges: A:E.46, A:E.46, A:E.46, A:T.64, A:T.64
EDO.8: 2 residues within 4Å:- Chain A: Q.15, L.16
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.16, A:L.16
EDO.9: 3 residues within 4Å:- Chain A: L.119, E.120, E.123
1 PLIP interactions:1 interactions with chain A- Water bridges: A:E.120
EDO.10: 4 residues within 4Å:- Chain A: G.286, E.287, F.288, R.289
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.286
- Water bridges: A:E.287
EDO.11: 4 residues within 4Å:- Chain A: L.279, Q.283, V.290, E.292
3 PLIP interactions:3 interactions with chain A- Water bridges: A:Q.276, A:L.279, A:E.292
EDO.12: 6 residues within 4Å:- Chain A: R.110, W.198, G.200, G.201
- Chain B: I.195, P.213
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.110, B:I.195
- Water bridges: B:R.196
EDO.13: 3 residues within 4Å:- Chain A: H.253, R.293, Q.299
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.299
EDO.21: 5 residues within 4Å:- Chain B: Y.250, R.310, E.344, L.345, R.348
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Y.250, B:Y.250, B:R.310, B:R.348
- Water bridges: B:R.310, B:E.344
EDO.22: 5 residues within 4Å:- Chain B: E.46, R.56, L.63, T.64, L.166
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:E.46, B:E.46, B:R.56, B:T.64
- Water bridges: B:Q.58, B:Q.58, B:T.64
EDO.23: 4 residues within 4Å:- Chain B: G.286, E.287, F.288, R.289
6 PLIP interactions:6 interactions with chain B- Water bridges: B:E.287, B:F.288, B:R.289, B:R.289, B:R.289, B:V.290
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.14: 7 residues within 4Å:- Chain A: D.280, M.281, T.284, E.352, R.361, H.363, W.365
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.284, A:T.284, A:R.361, A:R.361, A:H.363
GOL.15: 1 residues within 4Å:- Chain A: W.98
1 PLIP interactions:1 interactions with chain A- Water bridges: A:E.364
GOL.24: 6 residues within 4Å:- Chain B: L.304, E.305, R.332, N.333, L.334, H.335
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:L.304, B:N.333, B:H.335, B:H.335
- Water bridges: B:R.332
GOL.25: 2 residues within 4Å:- Chain B: W.98
- Ligands: CL.20
No protein-ligand interaction detected (PLIP)GOL.26: 7 residues within 4Å:- Chain B: D.280, M.281, T.284, E.352, I.356, H.363, W.365
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.280, B:E.352
- Water bridges: B:T.284, B:E.352
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Borthwick, J.A. et al., Structurally Diverse Mitochondrial Branched Chain Aminotransferase (BCATm) Leads with Varying Binding Modes Identified by Fragment Screening. J.Med.Chem. (2016)
- Release Date
- 2016-03-23
- Peptides
- Branched-chain-amino-acid aminotransferase, mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 2 x 68C: 5-methyl-4-oxo-N-(1,3,4-thiadiazol-2-yl)-3,4-dihydrothieno[2,3-d]pyrimidine-6-carboxamide(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Borthwick, J.A. et al., Structurally Diverse Mitochondrial Branched Chain Aminotransferase (BCATm) Leads with Varying Binding Modes Identified by Fragment Screening. J.Med.Chem. (2016)
- Release Date
- 2016-03-23
- Peptides
- Branched-chain-amino-acid aminotransferase, mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B