SMTL ID : 5i5z.1

CDK8-CYCC IN COMPLEX WITH 8-(1-Methyl-2,2-dioxo-2,3-dihydro-1H-2l6-benzo[c]isothiazol-5-yl)-[1,6]naphthyridine-2-carboxylic acid methylamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 68U: N-methyl-8-(1-methyl-2,2-dioxo-2,3-dihydro-1H-2lambda~6~,1-benzothiazol-5-yl)-1,6-naphthyridine-2-carboxamide(Non-covalent)

68U.1: 15 residues within 4Å: Chain A: V.30, Y.35, V.38, A.53, K.55, F.100, D.101, Y.102, A.103, D.106, H.109, A.158, L.161, D.176, R.359 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.30, A:A.53, A:F.100 Hydrogen bonds: A:A.103, A:H.109, A:R.359 Water bridges: A:D.176 pi-Cation interactions: A:R.359

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: R.74, K.86, V.87 Chain B: D.149 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.87, B:D.149 FMT.3: 7 residues within 4Å: Chain B: A.2, M.3, A.4, I.153, V.154, Y.155, R.159 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mallinger, A. et al., 2,8-Disubstituted-1,6-Naphthyridines and 4,6-Disubstituted-Isoquinolines with Potent, Selective Affinity for CDK8/19. Acs Med.Chem.Lett. (2016)

Release Date

2016-04-13

Peptides

Cyclin-dependent kinase 8: A
Cyclin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 8

Cyclin-C

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