- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 2 x 67W: (2-{[4-(1H-pyrazol-3-yl)phenyl]carbamoyl}phenyl)acetic acid(Non-covalent)
67W.2: 17 residues within 4Å:- Chain A: F.34, F.79, K.83, Y.145, R.147, V.174, G.175, A.176, Y.177, K.206, T.244, G.316, T.317, A.318
- Chain B: Y.74, V.159
- Ligands: PLP.1
13 PLIP interactions:2 interactions with chain B, 11 interactions with chain A- Hydrophobic interactions: B:Y.74, B:V.159, A:F.79, A:T.244, A:A.318
- Hydrogen bonds: A:K.83, A:Y.145, A:G.175, A:T.244, A:T.244, A:A.318
- pi-Stacking: A:F.34, A:Y.177
67W.10: 17 residues within 4Å:- Chain A: Y.74, V.159
- Chain B: F.34, F.79, K.83, Y.145, R.147, V.174, G.175, A.176, Y.177, K.206, T.244, G.316, T.317, A.318
- Ligands: PLP.9
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:F.34, B:F.79, B:T.244, B:A.318, A:V.159
- Hydrogen bonds: B:K.83, B:G.175, B:A.318
- pi-Stacking: B:F.34, B:Y.177
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 3 residues within 4Å:- Chain A: G.286, F.288, R.289
1 PLIP interactions:1 interactions with chain A- Water bridges: A:E.287
EDO.5: 4 residues within 4Å:- Chain A: M.281, T.284, H.363, W.365
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.280, A:T.284, A:H.363
EDO.6: 5 residues within 4Å:- Chain A: Y.250, R.310, E.344, L.345, R.348
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.250, A:R.310, A:R.348
- Water bridges: A:R.310
EDO.7: 3 residues within 4Å:- Chain A: E.46, L.63, T.64
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.46, A:T.64
EDO.8: 3 residues within 4Å:- Chain A: P.264, L.265, N.266
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.265
EDO.12: 4 residues within 4Å:- Chain B: G.286, E.287, F.288, R.289
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:F.288
- Water bridges: B:E.287
EDO.13: 6 residues within 4Å:- Chain B: D.280, M.281, T.284, E.352, H.363, W.365
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.280, B:E.352, B:H.363
- Water bridges: B:T.284
EDO.14: 4 residues within 4Å:- Chain B: Y.250, R.310, E.344, R.348
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Y.250, B:Y.250, B:R.310, B:R.348, B:R.348
- Water bridges: B:R.310
EDO.15: 5 residues within 4Å:- Chain B: E.46, R.56, L.63, T.64, L.166
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.46, B:R.56, B:T.64
- Water bridges: B:T.64
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Borthwick, J.A. et al., Structurally Diverse Mitochondrial Branched Chain Aminotransferase (BCATm) Leads with Varying Binding Modes Identified by Fragment Screening. J.Med.Chem. (2016)
- Release Date
- 2016-03-23
- Peptides
- Branched-chain-amino-acid aminotransferase, mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 2 x 67W: (2-{[4-(1H-pyrazol-3-yl)phenyl]carbamoyl}phenyl)acetic acid(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Borthwick, J.A. et al., Structurally Diverse Mitochondrial Branched Chain Aminotransferase (BCATm) Leads with Varying Binding Modes Identified by Fragment Screening. J.Med.Chem. (2016)
- Release Date
- 2016-03-23
- Peptides
- Branched-chain-amino-acid aminotransferase, mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B