SMTL ID : 5i6r.1

Crystal Structure of srGAP2 F-BARx WT Form-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x MLT: D-MALATE(Non-covalent)

MLT.1: 7 residues within 4Å: Chain A: M.61, S.64, R.65, E.68, S.110, R.111, T.114 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.114 Hydrogen bonds: A:E.68, A:S.110, A:T.114, A:T.114 Water bridges: A:R.111, A:R.111 Salt bridges: A:R.111 MLT.5: 7 residues within 4Å: Chain B: M.61, S.64, R.65, E.68, S.110, R.111, T.114 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:T.114 Hydrogen bonds: B:S.110, B:T.114 Water bridges: B:R.111, B:R.111 Salt bridges: B:R.111

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: D.36, C.39, F.139, K.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.36 Water bridges: A:K.140 ACT.3: 2 residues within 4Å: Chain A: Q.44, Q.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.44 Water bridges: A:Q.47, A:D.51 ACT.6: 4 residues within 4Å: Chain B: D.36, C.39, F.139, K.140 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.36, B:D.36 Water bridges: B:K.140 ACT.7: 2 residues within 4Å: Chain B: Q.44, Q.47 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.44 Water bridges: B:Q.47, A:K.77

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 5 residues within 4Å: Chain A: R.369, L.373, K.466, L.467, K.470 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.369, A:K.470 PGE.8: 5 residues within 4Å: Chain B: R.369, L.373, K.466, L.467, K.470 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.369, B:K.470

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sporny, M. et al., Structural Basis for srGAP2 Membrane Interactions, and Antagonism by the Human Specific Paralog srGAP2C. To Be Published

Release Date

2017-08-30

Peptides

SLIT-ROBO Rho GTPase-activating protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SLIT-ROBO Rho GTPase-activating protein 2