SMTL ID : 5i72.1

Crystal structure of the oligomeric form of the Lassa virus matrix protein Z

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-12-mer

Ligands

24 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:C.26, A:C.29 ZN.2: 4 residues within 4Å: Chain A: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:H.23, A:C.40, A:C.43 ZN.3: 4 residues within 4Å: Chain B: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.7, B:C.10, B:C.26, B:C.29 ZN.4: 4 residues within 4Å: Chain B: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.20, B:H.23, B:C.40, B:C.43 ZN.5: 4 residues within 4Å: Chain C: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.7, C:C.10, C:C.26, C:C.29 ZN.6: 4 residues within 4Å: Chain C: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.20, C:H.23, C:C.40, C:C.43 ZN.7: 4 residues within 4Å: Chain D: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.7, D:C.10, D:C.26, D:C.29 ZN.8: 4 residues within 4Å: Chain D: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.20, D:H.23, D:C.40, D:C.43 ZN.9: 4 residues within 4Å: Chain E: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.7, E:C.10, E:C.26, E:C.29 ZN.10: 4 residues within 4Å: Chain E: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.20, E:H.23, E:C.40, E:C.43 ZN.11: 4 residues within 4Å: Chain F: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.7, F:C.10, F:C.26, F:C.29 ZN.12: 4 residues within 4Å: Chain F: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.20, F:H.23, F:C.40, F:C.43 ZN.13: 4 residues within 4Å: Chain G: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.7, G:C.10, G:C.26, G:C.29 ZN.14: 4 residues within 4Å: Chain G: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.20, G:H.23, G:C.40, G:C.43 ZN.15: 4 residues within 4Å: Chain H: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.7, H:C.10, H:C.26, H:C.29 ZN.16: 4 residues within 4Å: Chain H: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.20, H:H.23, H:C.40, H:C.43 ZN.17: 4 residues within 4Å: Chain I: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.7, I:C.10, I:C.26, I:C.29 ZN.18: 4 residues within 4Å: Chain I: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.20, I:H.23, I:C.40, I:C.43 ZN.19: 4 residues within 4Å: Chain J: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.26, J:C.29 ZN.20: 4 residues within 4Å: Chain J: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.20, J:H.23, J:C.40, J:C.43 ZN.21: 4 residues within 4Å: Chain K: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.7, K:C.10, K:C.26, K:C.29 ZN.22: 4 residues within 4Å: Chain K: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.20, K:H.23, K:C.40, K:C.43 ZN.23: 4 residues within 4Å: Chain L: C.7, C.10, C.26, C.29 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.7, L:C.10, L:C.26, L:C.29 ZN.24: 4 residues within 4Å: Chain L: C.20, H.23, C.40, C.43 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.20, L:H.23, L:C.40, L:C.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hastie, K.M. et al., Crystal Structure of the Oligomeric Form of Lassa Virus Matrix Protein Z. J.Virol. (2016)

Release Date

2016-03-09

Peptides

RING finger protein Z: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

I
A

J
B

K
A

L
B

RING finger protein Z