SMTL ID : 5i80.1

BRD4 in complex with Cpd2 (N,N-dimethyl-3-(6-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl)benzamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x 67B: N,N-dimethyl-3-(6-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl)benzamide(Non-covalent)

67B.1: 9 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, C.95, N.99, I.105 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:L.51, A:L.51, A:I.105 Hydrogen bonds: A:N.99, A:N.99

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94 EDO.3: 2 residues within 4Å: Chain A: Q.82, I.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.82 Water bridges: A:Q.82

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 6 residues within 4Å: Chain A: Q.43, Q.44, P.45, G.67, T.68, K.71 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crawford, T.D. et al., Diving into the Water: Inducible Binding Conformations for BRD4, TAF1(2), BRD9, and CECR2 Bromodomains. J.Med.Chem. (2016)

Release Date

2016-10-12

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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