SMTL ID : 5i8c.1

Crystal Structure of HIV-1 Clade A BG505 Fusion Peptide (residue 512-520) in Complex with Broadly Neutralizing Antibody VRC34.01 Fab

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL- PHE: HIV-1 Clade A BG505 Fusion Peptide (residue 512-520)(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL-PHE.1: 20 residues within 4Å: Chain A: T.28, T.30, G.31, A.33, W.50, I.51, N.52, H.54, D.57, T.58, T.59, Y.101, N.104, E.105, A.106 Chain B: E.32, M.91, S.93, Y.94, L.96 24 PLIP interactions: 16 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:A.33, A:W.50, A:Y.101, A:Y.101, A:Y.101, A:A.106, B:Y.94, B:Y.94, B:L.96 Hydrogen bonds: A:T.30, A:N.52, A:Y.101, A:Y.101, A:N.104, A:A.106, B:R.30, B:E.32, B:M.91, B:Y.94, B:Y.94 Water bridges: A:S.55, A:D.57, A:Y.101, A:N.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kong, R. et al., Fusion peptide of HIV-1 as a site of vulnerability to neutralizing antibody. Science (2016)

Release Date

2016-05-25

Peptides

VRC34.01 Fab heavy chain: A
VRC34.01 Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VRC34.01 Fab heavy chain

VRC34.01 Fab light chain

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