SMTL ID : 5i8o.1

HMM5 Fab in complex with disaccharide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 2F8- FUC: alpha-L-fucopyranose-(1-3)-methyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside(Non-covalent)

2F8-FUC.1: 8 residues within 4Å: Chain A: T.30, Y.31, N.32, D.51, T.52, F.97, D.98, Y.99 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.31, A:Y.99 Hydrogen bonds: A:F.97, A:T.30, A:N.32, A:T.52, A:T.52, A:T.52 Water bridges: B:R.52, A:S.29, A:T.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plum, M. et al., Structure of HMM5 Fab with a bound disaccharide. To be published

Release Date

2016-03-23

Peptides

HMM5 antibody heavy chain: A
HMM5 antibody light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

HMM5 antibody heavy chain

HMM5 antibody light chain

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