SMTL ID : 5ian.1

Caspase 3 V266N

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x LEU- SER- SER: LEU-SER-SER(Non-covalent)

LEU-SER-SER.1: 5 residues within 4Å: Chain A: R.75, R.86, N.87, K.88, N.89 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.75, A:N.87, A:N.87, A:K.88 LEU-SER-SER.4: 5 residues within 4Å: Chain B: R.75, R.86, N.87, K.88, N.89 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.75, B:N.87, B:N.87, B:K.88

2 x ACE- ASP- GLU- VAL- ASP- 0QE: ACE-ASP-GLU-VAL-ASK(Non-covalent)

ACE-ASP-GLU-VAL-ASP-0QE.2: 14 residues within 4Å: Chain A: R.64, S.120, H.121, Q.161, C.163, Y.204, S.205, W.206, R.207, N.208, S.209, W.214, S.249, F.250 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.204 Hydrogen bonds: A:S.209 ACE-ASP-GLU-VAL-ASP-0QE.5: 14 residues within 4Å: Chain B: R.64, S.120, H.121, Q.161, C.163, Y.204, S.205, W.206, R.207, N.208, S.209, W.214, S.249, F.250 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.204 Hydrogen bonds: B:S.209

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 7 residues within 4Å: Chain A: Q.161, S.205, W.206, S.213, W.214, F.215, Q.261 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.161, A:W.206, A:F.215, A:Q.261, A:Q.261 NA.6: 7 residues within 4Å: Chain B: Q.161, S.205, W.206, S.213, W.214, F.215, Q.261 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.161, B:Q.161, B:W.206, B:F.215, B:Q.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maciag, J.J. et al., Tunable allosteric library of caspase-3 identifies coupling between conserved water molecules and conformational selection. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-10-26

Peptides

Caspase-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Caspase-3