SMTL ID : 5ibq.1

Crystal structure of an ABC solute binding protein from Rhizobium etli CFN 42 (RHE_PF00037,TARGET EFI-511357) in complex with alpha-D-apiose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x XXM: 3-C-(hydroxylmethyl)-alpha-D-erythrofuranose(Non-covalent)

XXM.1: 12 residues within 4Å: Chain A: N.36, F.38, F.39, D.112, R.113, D.159, N.161, R.165, W.189, N.215, D.240, Q.260 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.36, A:N.36, A:D.159, A:N.161, A:R.165, A:R.165, A:N.215, A:D.240, A:D.240, A:Q.260 Water bridges: A:T.217 Salt bridges: A:R.113, A:R.165

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.171, D.174, D.175 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.171, A:D.174, A:D.175, H2O.3, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Crystal structure of an ABC solute binding protein from Rhizobium etli CFN 42 (RHE_PF00037,TARGET EFI-511357) in complex with alpha-D-apiose. To be published

Release Date

2016-04-20

Peptides

Probable ribose ABC transporter, substrate-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable ribose ABC transporter, substrate-binding protein