- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x 2H4: (1S)-1-(3,4-dihydroxybenzyl)-1,2,3,4-tetrahydroisoquinoline-6,7-diol(Non-covalent)
2H4.2: 18 residues within 4Å:- Chain A: A.112, T.115, I.116, I.150, F.164, G.167, M.168, D.171, C.255, H.258, D.259, D.308, M.309, N.312, T.313
- Chain B: W.18, Y.22
- Ligands: SAH.1
13 PLIP interactions:12 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:I.116, A:I.116, A:I.150, A:F.164, A:N.312, A:T.313, B:W.18
- Hydrogen bonds: A:D.171, A:D.171, A:H.258, A:D.259, A:D.308
- pi-Stacking: A:F.164
2H4.12: 18 residues within 4Å:- Chain A: W.18, Y.22
- Chain B: A.112, T.115, I.116, I.150, F.164, G.167, M.168, D.171, C.255, H.258, D.259, D.308, M.309, N.312, T.313
- Ligands: SAH.11
13 PLIP interactions:1 interactions with chain A, 12 interactions with chain B- Hydrophobic interactions: A:W.18, B:I.116, B:I.116, B:I.150, B:F.164, B:N.312, B:T.313
- Hydrogen bonds: B:D.171, B:D.171, B:H.258, B:D.259, B:D.308
- pi-Stacking: B:F.164
- 6 x K: POTASSIUM ION(Non-covalent)
K.3: 3 residues within 4Å:- Chain A: H.126
- Chain B: H.126
- Ligands: K.13
No protein-ligand interaction detected (PLIP)K.4: 4 residues within 4Å:- Chain A: D.291, H.296, T.299, R.302
No protein-ligand interaction detected (PLIP)K.5: 3 residues within 4Å:- Chain A: H.157, P.158, E.159
No protein-ligand interaction detected (PLIP)K.13: 3 residues within 4Å:- Chain A: H.126
- Chain B: H.126
- Ligands: K.3
No protein-ligand interaction detected (PLIP)K.14: 4 residues within 4Å:- Chain B: D.291, H.296, T.299, R.302
No protein-ligand interaction detected (PLIP)K.15: 3 residues within 4Å:- Chain B: H.157, P.158, E.159
No protein-ligand interaction detected (PLIP)- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 5 residues within 4Å:- Chain A: M.5, E.9
- Chain B: W.105, D.106, K.107
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:E.9, B:D.106
EDO.7: 9 residues within 4Å:- Chain A: N.19, F.20, G.23, D.26
- Chain B: N.19, F.20, G.23, D.26
- Ligands: EDO.17
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.19, A:D.26, B:D.26
EDO.8: 5 residues within 4Å:- Chain A: K.31, L.114, T.117, D.118, L.163
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.117, A:T.117, A:D.118
- Water bridges: A:K.119, A:K.160
EDO.9: 6 residues within 4Å:- Chain A: I.42, G.46, S.47, P.48, G.93, L.94
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.94
- Water bridges: A:H.43, A:T.82, A:L.94
EDO.10: 3 residues within 4Å:- Chain A: L.221, P.222, H.223
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.223
EDO.16: 5 residues within 4Å:- Chain A: W.105, D.106, K.107
- Chain B: M.5, E.9
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.9, A:D.106
EDO.17: 9 residues within 4Å:- Chain A: N.19, F.20, G.23, D.26
- Chain B: N.19, F.20, G.23, D.26
- Ligands: EDO.7
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:D.26, B:N.19, B:D.26
EDO.18: 5 residues within 4Å:- Chain B: K.31, L.114, T.117, D.118, L.163
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.117, B:T.117, B:D.118
- Water bridges: B:K.119, B:K.160
EDO.19: 6 residues within 4Å:- Chain B: I.42, G.46, S.47, P.48, G.93, L.94
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.94
- Water bridges: B:H.43, B:T.82, B:L.94
EDO.20: 3 residues within 4Å:- Chain B: L.221, P.222, H.223
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.223
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Robin, A.Y. et al., Crystal structure of norcoclaurine-6-O-methyltransferase, a key rate-limiting step in the synthesis of benzylisoquinoline alkaloids. Plant J. (2016)
- Release Date
- 2016-06-08
- Peptides
- (S)-norcoclaurine 6-O-methyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x 2H4: (1S)-1-(3,4-dihydroxybenzyl)-1,2,3,4-tetrahydroisoquinoline-6,7-diol(Non-covalent)
- 6 x K: POTASSIUM ION(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Robin, A.Y. et al., Crystal structure of norcoclaurine-6-O-methyltransferase, a key rate-limiting step in the synthesis of benzylisoquinoline alkaloids. Plant J. (2016)
- Release Date
- 2016-06-08
- Peptides
- (S)-norcoclaurine 6-O-methyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A