SMTL ID : 5icv.2 (1 other biounit)

Crystal structure of human NatF (hNaa60) bound to a bisubstrate analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x MET- LYS- ALA- VAL: MET-LYS-ALA-VAL-LIG(Non-covalent)

MET-LYS-ALA-VAL.1: 10 residues within 4Å: Chain A: F.30, I.32, E.33, Y.34, Y.93, L.95, H.134, Y.160, Y.161 Ligands: 1XE.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.30, A:I.32, A:Y.34, A:Y.160, A:Y.161 Hydrogen bonds: A:Y.34, A:L.95, A:L.95 Water bridges: A:W.38, A:Y.93, A:H.134, A:H.134, A:S.162

1 x 1XE: [5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)furan-2-yl]methyl (3R)-4-{[3-({(E)-2-[(2,2-dihydroxyethyl)sulfanyl]ethenyl}amino)-3-oxopropyl]amino}-3-hydroxy-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate(Non-covalent)

1XE.2: 25 residues within 4Å: Chain A: W.29, F.30, L.95, S.96, L.97, G.98, V.99, R.104, K.105, H.106, G.107, I.108, G.109, S.110, H.134, V.135, N.139, T.141, A.142, N.144, F.145, Y.146, N.148, R.149 Ligands: MET-LYS-ALA-VAL.1 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.97 Hydrogen bonds: A:L.95, A:L.97, A:L.97, A:V.99, A:R.104, A:K.105, A:H.106, A:G.107, A:I.108, A:G.109, A:S.110, A:N.139, A:N.148 Water bridges: A:S.110, A:A.142, A:A.142, A:F.145, A:F.145, A:R.149 Salt bridges: A:R.149, A:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stve, S.I. et al., Crystal Structure of the Golgi-Associated Human N alpha-Acetyltransferase 60 Reveals the Molecular Determinants for Substrate-Specific Acetylation. Structure (2016)

Release Date

2016-06-22

Peptides

N-alpha-acetyltransferase 60: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

N-alpha-acetyltransferase 60

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