SMTL ID : 5icw.3 (2 other biounits)

Crystal structure of human NatF (hNaa60) homodimer bound to Coenzyme A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x COA: COENZYME A(Non-covalent)

COA.1: 18 residues within 4Å: Chain A: F.32, L.99, G.100, V.101, R.106, K.107, H.108, G.109, I.110, G.111, S.112, N.141, T.143, A.144, F.147, Y.148, N.150, R.151 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.99 Hydrogen bonds: A:L.99, A:V.101, A:R.106, A:K.107, A:H.108, A:G.109, A:I.110, A:G.111, A:S.112, A:N.141, A:N.150, A:R.151 Water bridges: A:H.108, A:S.112, A:S.112, A:S.112, A:S.112 Salt bridges: A:R.151, A:R.151 COA.3: 18 residues within 4Å: Chain B: F.32, L.99, G.100, V.101, R.106, K.107, H.108, G.109, I.110, G.111, S.112, N.141, T.143, A.144, F.147, N.150, R.151 Ligands: CL.4 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:F.32, B:L.99 Hydrogen bonds: B:L.99, B:V.101, B:K.107, B:H.108, B:G.109, B:I.110, B:G.111, B:S.112, B:N.141, B:N.150, B:R.151 Water bridges: B:L.99, B:H.108, B:H.108, B:A.144 Salt bridges: B:R.151, B:R.151

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: V.137, L.138, N.141 Chain B: I.165 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: V.137, L.138, N.141 Ligands: COA.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stve, S.I. et al., Crystal Structure of the Golgi-Associated Human N alpha-Acetyltransferase 60 Reveals the Molecular Determinants for Substrate-Specific Acetylation. Structure (2016)

Release Date

2016-06-22

Peptides

N-alpha-acetyltransferase 60: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

N-alpha-acetyltransferase 60

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